CRISPRone

CRISPRone report for GCA_004053835.1_ASM405383v1

♦ Seq 1: SBKC01000061.1 Pseudomonas aeruginosa strain Pae113, whole genome shotgun sequence

⇒Summary: seq-len = 25700 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7844-18330 bp Zoom in on locus 1 x6 x21 CRISPR array Location: 7844-8172 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 7844-8172 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09718:cas1 Type: universal Location: 8432-9406 bp Gene: COG1203:cas3 Type: Type-I Location: 9403-12633 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 13044-14345 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 14332-15315 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 15326-16354 bp Gene: cd09739:cas6f Type: other Location: 16358-16921 bp CRISPR array Location: 17106-18330 bp Num of repeats: 21 Spacers: s6-s25 CRISPR array Location: 17106-18330 bp Num of repeats: 21 Spacers: s6-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7844-8172 bp]: array | spacers
           [Locus range 17106-18330 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SBKC01000010.1 Pseudomonas aeruginosa strain Pae113, whole genome shotgun sequence

⇒Summary: seq-len = 175192 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 94916-106547 bp Zoom in on locus 1 x24 x10 CRISPR array Location: 94916-96348 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 94916-96348 bp Num of repeats: 24 Spacers: s1-s23 Gene: pfam09707:cas2 Type: universal Location: 96413-96712 bp Gene: cd09719:cas1 Type: universal Location: 96709-97599 bp Gene: pfam08798:cas6e Type: other Location: 97626-98165 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 98212-98874 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 98876-100018 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 100028-100558 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 100555-102123 bp Gene: cd09641:cas3HD Type: Type-I Location: 102485-105193 bp CRISPR array Location: 105970-106547 bp Num of repeats: 10 Spacers: s24-s32 CRISPR array Location: 105970-106547 bp Num of repeats: 10 Spacers: s24-s32 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 94916-96348 bp]: array | spacers
           [Locus range 105970-106547 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)