CRISPRone

CRISPRone report for GCA_004053945.1_ASM405394v1

♦ Seq 1: SBKB01000014.1 Pseudomonas aeruginosa strain Pae83, whole genome shotgun sequence

⇒Summary: seq-len = 147724 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 134684-141472 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 134684-137905 bp Gene: pfam13280:WYL Type: other Location: 137918-138826 bp Gene: unk Type: unknown Location: 139106-139996 bp Gene: unk Type: unknown Location: 140131-140448 bp Gene: mkCas0115:csx3 Type: other Location: 140441-141472 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SBKB01000042.1 Pseudomonas aeruginosa strain Pae83, whole genome shotgun sequence

⇒Summary: seq-len = 48872 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-12464 bp Zoom in on locus 1 x29 x2 x34 CRISPR array Location: 6-1715 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 6-1715 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 1787-1875 bp Num of repeats: 2 Spacers: s29-s29 CRISPR array Location: 1787-1875 bp Num of repeats: 2 Spacers: s29-s29 Gene: cd09718:cas1 Type: universal Location: 2135-3109 bp Gene: COG1203:cas3 Type: Type-I Location: 3106-6336 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6394-7698 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7685-8668 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8679-9707 bp Gene: cd09739:cas6f Type: other Location: 9711-10274 bp CRISPR array Location: 10458-12464 bp Num of repeats: 34 Spacers: s30-s62 CRISPR array Location: 10458-12464 bp Num of repeats: 34 Spacers: s30-s62 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6-1715 bp]: array | spacers
           [Locus range 1787-1875 bp]: array | spacers
           [Locus range 10458-12464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SBKB01000028.1 Pseudomonas aeruginosa strain Pae83, whole genome shotgun sequence

⇒Summary: seq-len = 92168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-1414 bp Zoom in on locus 1 x24 CRISPR array Location: 6-1414 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 6-1414 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6-1414 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)