CRISPRone

CRISPRone report for GCA_004054065.1_ASM405406v1

♦ Seq 1: SBJR01000011.1 Pseudomonas aeruginosa strain Pae21, whole genome shotgun sequence

⇒Summary: seq-len = 227985 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38083-47250 bp Zoom in on locus 1 x3 x8 CRISPR array Location: 38083-38230 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 38083-38230 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09739:cas6f Type: other Location: 38412-38975 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38979-40007 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40018-41001 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40988-42292 bp Gene: COG1203:cas3 Type: Type-I Location: 42350-45580 bp Gene: cd09718:cas1 Type: universal Location: 45577-46551 bp CRISPR array Location: 46803-47250 bp Num of repeats: 8 Spacers: s3-s9 CRISPR array Location: 46803-47250 bp Num of repeats: 8 Spacers: s3-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38083-38230 bp]: array | spacers
           [Locus range 46803-47250 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SBJR01000003.1 Pseudomonas aeruginosa strain Pae21, whole genome shotgun sequence

⇒Summary: seq-len = 590847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 381666-382355 bp Zoom in on locus 1 x12 CRISPR array Location: 381666-382355 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 381666-382355 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 381666-382355 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)