CRISPRone

CRISPRone report for GCA_004054095.1_ASM405409v1

♦ Seq 1: SBJS01000019.1 Pseudomonas aeruginosa strain Pae22, whole genome shotgun sequence

⇒Summary: seq-len = 111400 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 41723-52163 bp Zoom in on locus 1 x21 x11 CRISPR array Location: 41723-42953 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 41723-42953 bp Num of repeats: 21 Spacers: s1-s20 Gene: cd09718:cas1 Type: universal Location: 43213-44187 bp Gene: COG1203:cas3 Type: Type-I Location: 44184-47414 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 47472-48776 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 48763-49746 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 49757-50785 bp Gene: cd09739:cas6f Type: other Location: 50789-51352 bp CRISPR array Location: 51536-52163 bp Num of repeats: 11 Spacers: s21-s30 CRISPR array Location: 51536-52163 bp Num of repeats: 11 Spacers: s21-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 41723-42953 bp]: array | spacers
           [Locus range 51536-52163 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SBJS01000003.1 Pseudomonas aeruginosa strain Pae22, whole genome shotgun sequence

⇒Summary: seq-len = 484533 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 342166-352401 bp Zoom in on locus 1 x12 x15 CRISPR array Location: 342166-342866 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 342166-342866 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 343638-346319 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 346322-347890 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 347887-348417 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 348427-349569 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 349571-350233 bp Gene: pfam08798:cas6e Type: other Location: 350208-350819 bp Gene: cd09719:cas1 Type: universal Location: 350846-351157 bp Gene: pfam09707:cas2 Type: universal Location: 351154-351453 bp CRISPR array Location: 351518-352401 bp Num of repeats: 15 Spacers: s12-s25 CRISPR array Location: 351518-352401 bp Num of repeats: 15 Spacers: s12-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 342166-342866 bp]: array | spacers
           [Locus range 351518-352401 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)