CRISPRone

CRISPRone report for GCA_004123335.1_ASM412333v1

♦ Seq 1: SDVP01000041.1 Pseudomonas aeruginosa strain M66 NODE_41_length_44610_cov_22.1383, whole genome shotgun sequence

⇒Summary: seq-len = 44610 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28111-38745 bp Zoom in on locus 1 x19 x5 CRISPR array Location: 28111-29237 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 28111-29237 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam09707:cas2 Type: universal Location: 29302-29601 bp Gene: cd09719:cas1 Type: universal Location: 29598-30488 bp Gene: pfam08798:cas6e Type: other Location: 30515-31054 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 31101-31763 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 31765-32907 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 32917-33447 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 33444-35012 bp Gene: cd09641:cas3HD Type: Type-I Location: 35015-37696 bp CRISPR array Location: 38473-38745 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 38473-38745 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 28111-29237 bp]: array | spacers
           [Locus range 38473-38745 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)