CRISPRone

CRISPRone report for GCA_004123545.1_ASM412354v1

♦ Seq 1: SDVF01000053.1 Pseudomonas aeruginosa strain M65 NODE_53_length_44151_cov_21.5392, whole genome shotgun sequence

⇒Summary: seq-len = 44151 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27732-38366 bp Zoom in on locus 1 x19 x5 CRISPR array Location: 27732-28858 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 27732-28858 bp Num of repeats: 19 Spacers: s1-s18 Gene: pfam09707:cas2 Type: universal Location: 28923-29222 bp Gene: cd09719:cas1 Type: universal Location: 29219-30109 bp Gene: pfam08798:cas6e Type: other Location: 30136-30675 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 30722-31384 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 31386-32528 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 32538-33068 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 33065-34633 bp Gene: cd09641:cas3HD Type: Type-I Location: 34636-37317 bp CRISPR array Location: 38094-38366 bp Num of repeats: 5 Spacers: s19-s22 CRISPR array Location: 38094-38366 bp Num of repeats: 5 Spacers: s19-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27732-28858 bp]: array | spacers
           [Locus range 38094-38366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)