CRISPRone

CRISPRone report for GCA_004213525.1_ASM421352v1

♦ Seq 1: SGUI01000075.1 Pseudomonas aeruginosa strain PAE1880 NODE_75_length_35310_cov_7.989910, whole genome shotgun sequence

⇒Summary: seq-len = 35310 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27479-28228 bp Zoom in on locus 1 x13 CRISPR array Location: 27479-28228 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 27479-28228 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27479-28228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SGUI01000061.1 Pseudomonas aeruginosa strain PAE1880 NODE_61_length_49136_cov_5.263503, whole genome shotgun sequence

⇒Summary: seq-len = 49136 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 315-10914 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 315-883 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 315-883 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1134-2108 bp Gene: COG1203:cas3 Type: Type-I Location: 2105-5335 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5746-7047 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7034-8017 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8028-9056 bp Gene: cd09739:cas6f Type: other Location: 9060-9623 bp CRISPR array Location: 9807-10914 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 9807-10914 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 315-883 bp]: array | spacers
           [Locus range 9807-10914 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)