CRISPRone

CRISPRone report for GCA_004313745.1_ASM431374v1

♦ Seq 1: BIMY01000011.1 Clostridioides difficile FD086 DNA, sequence11, whole genome shotgun sequence

⇒Summary: seq-len = 134125 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 115662-116281 bp Zoom in on locus 1 x10 CRISPR array Location: 115662-116281 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 115662-116281 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 115662-116281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIMY01000040.1 Clostridioides difficile FD086 DNA, sequence40, whole genome shotgun sequence

⇒Summary: seq-len = 25718 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17063-17552 bp Zoom in on locus 1 x8 CRISPR array Location: 17063-17552 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 17063-17552 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17063-17552 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIMY01000022.1 Clostridioides difficile FD086 DNA, sequence22, whole genome shotgun sequence

⇒Summary: seq-len = 53940 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32586-32680 bp Zoom in on locus 1 x2 CRISPR array Location: 32586-32680 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 32586-32680 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 32586-32680 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIMY01000037.1 Clostridioides difficile FD086 DNA, sequence37, whole genome shotgun sequence

⇒Summary: seq-len = 30853 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2306-2667 bp Zoom in on locus 1 x6 CRISPR array Location: 2306-2667 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2306-2667 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2306-2667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIMY01000013.1 Clostridioides difficile FD086 DNA, sequence13, whole genome shotgun sequence

⇒Summary: seq-len = 114692 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28790-28951 bp Zoom in on locus 1 x3 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28790-28951 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28790-28951 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIMY01000003.1 Clostridioides difficile FD086 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 239492 bp; # of CRISPR array = 1; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 97888-98245 bp 2 Locus 2: 178015-187738 bp Zoom in on locus 1 x6 Zoom in on locus 2 CRISPR array Location: 97888-98245 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 97888-98245 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 178015-179124 bp Gene: cas14:cas14 Type: Type-V Location: 179277-180449 bp Gene: unk Type: unknown Location: 180477-180935 bp Gene: pfam01881:cas6 Type: other Location: 181249-181986 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 181991-183457 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 183477-184490 bp Gene: cd09693:cas5 Type: Type-I Location: 184506-185303 bp Gene: cd09641:cas3HD Type: Type-I Location: 185330-187738 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 97888-98245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)