CRISPRone

CRISPRone report for GCA_004313785.1_ASM431378v1

♦ Seq 1: BINA01000010.1 Clostridioides difficile FD006 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 38504 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38215-38506 bp Zoom in on locus 1 x5 CRISPR array Location: 38215-38506 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 38215-38506 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38215-38506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINA01000140.1 Clostridioides difficile FD006 DNA, sequence140, whole genome shotgun sequence

⇒Summary: seq-len = 11432 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3502-6557 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 3502-3729 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3502-3729 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6396-6557 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 6396-6557 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3502-3729 bp]: array | spacers
           [Locus range 6396-6557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINA01000146.1 Clostridioides difficile FD006 DNA, sequence146, whole genome shotgun sequence

⇒Summary: seq-len = 10414 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 297-10020 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 297-1406 bp Gene: cas14:cas14 Type: Type-V Location: 1559-2731 bp Gene: unk Type: unknown Location: 2759-3217 bp Gene: pfam01881:cas6 Type: other Location: 3531-4268 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4273-5739 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5759-6772 bp Gene: cd09693:cas5 Type: Type-I Location: 6788-7585 bp Gene: cd09641:cas3HD Type: Type-I Location: 7612-10020 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINA01000147.1 Clostridioides difficile FD006 DNA, sequence147, whole genome shotgun sequence

⇒Summary: seq-len = 10335 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2436-2596 bp Zoom in on locus 1 x3 CRISPR array Location: 2436-2596 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2436-2596 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2436-2596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINA01000307.1 Clostridioides difficile FD006 DNA, sequence307, whole genome shotgun sequence

⇒Summary: seq-len = 2592 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2029-2123 bp Zoom in on locus 1 x2 CRISPR array Location: 2029-2123 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2029-2123 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2029-2123 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINA01000219.1 Clostridioides difficile FD006 DNA, sequence219, whole genome shotgun sequence

⇒Summary: seq-len = 5734 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-360 bp Zoom in on locus 1 x6 CRISPR array Location: 0-360 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-360 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINA01000177.1 Clostridioides difficile FD006 DNA, sequence177, whole genome shotgun sequence

⇒Summary: seq-len = 8160 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3126-3615 bp Zoom in on locus 1 x8 CRISPR array Location: 3126-3615 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3126-3615 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3126-3615 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)