CRISPRone

CRISPRone report for GCA_004313825.1_ASM431382v1

♦ Seq 1: BINC01000085.1 Clostridioides difficile FD008 DNA, sequence085, whole genome shotgun sequence

⇒Summary: seq-len = 15639 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160-11244 bp Zoom in on locus 1 x24 Gene: pfam13280:WYL Type: other Location: 160-1074 bp Gene: pfam01881:cas6 Type: other Location: 1152-1889 bp Gene: unk Type: unknown Location: 1895-2401 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2459-3745 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3747-4661 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 4663-5364 bp Gene: cd09641:cas3HD Type: Type-I Location: 5375-7696 bp Gene: pfam01930:cas4 Type: Type-I Location: 7711-8262 bp Gene: cd09722:cas1 Type: universal Location: 8265-9245 bp Gene: cd09725:cas2 Type: universal Location: 9248-9514 bp CRISPR array Location: 9698-11244 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 9698-11244 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9698-11244 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINC01000106.1 Clostridioides difficile FD008 DNA, sequence106, whole genome shotgun sequence

⇒Summary: seq-len = 13024 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7534-7957 bp Zoom in on locus 1 x7 CRISPR array Location: 7534-7957 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 7534-7957 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7534-7957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINC01000221.1 Clostridioides difficile FD008 DNA, sequence221, whole genome shotgun sequence

⇒Summary: seq-len = 6025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3113-3597 bp Zoom in on locus 1 x8 CRISPR array Location: 3113-3597 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3113-3597 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3113-3597 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINC01000207.1 Clostridioides difficile FD008 DNA, sequence207, whole genome shotgun sequence

⇒Summary: seq-len = 6471 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5995-6482 bp Zoom in on locus 1 x8 CRISPR array Location: 5995-6482 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5995-6482 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5995-6482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINC01000301.1 Clostridioides difficile FD008 DNA, sequence301, whole genome shotgun sequence

⇒Summary: seq-len = 3358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2798-3025 bp Zoom in on locus 1 x4 CRISPR array Location: 2798-3025 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2798-3025 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2798-3025 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINC01000013.1 Clostridioides difficile FD008 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 36282 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13403-19206 bp Zoom in on locus 1 x6 x5 x2 CRISPR array Location: 13403-13764 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 13403-13764 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 16407-16700 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 16407-16700 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 19111-19206 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 19111-19206 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13403-13764 bp]: array | spacers
           [Locus range 16407-16700 bp]: array | spacers
           [Locus range 19111-19206 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINC01000007.1 Clostridioides difficile FD008 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 50238 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28302-38034 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28302-30710 bp Gene: cd09693:cas5 Type: Type-I Location: 30737-31534 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31550-32563 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32583-34058 bp Gene: pfam01881:cas6 Type: other Location: 34063-34800 bp Gene: unk Type: unknown Location: 35114-35572 bp Gene: cas14:cas14 Type: Type-V Location: 35600-36772 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 36925-38034 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINC01000133.1 Clostridioides difficile FD008 DNA, sequence133, whole genome shotgun sequence

⇒Summary: seq-len = 10064 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4075-4634 bp Zoom in on locus 1 x9 CRISPR array Location: 4075-4634 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4075-4634 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4075-4634 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINC01000009.1 Clostridioides difficile FD008 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 41975 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15599-15888 bp Zoom in on locus 1 x5 CRISPR array Location: 15599-15888 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 15599-15888 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15599-15888 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINC01000203.1 Clostridioides difficile FD008 DNA, sequence203, whole genome shotgun sequence

⇒Summary: seq-len = 6654 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5240-6657 bp Zoom in on locus 1 x22 CRISPR array Location: 5240-6657 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 5240-6657 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5240-6657 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINC01000051.1 Clostridioides difficile FD008 DNA, sequence051, whole genome shotgun sequence

⇒Summary: seq-len = 20656 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9596-9889 bp Zoom in on locus 1 x5 CRISPR array Location: 9596-9889 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 9596-9889 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9596-9889 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)