CRISPRone

CRISPRone report for GCA_004313845.1_ASM431384v1

♦ Seq 1: BIND01000235.1 Clostridioides difficile FD009 DNA, sequence235, whole genome shotgun sequence

⇒Summary: seq-len = 5813 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1004 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1004 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1004 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1004 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIND01000279.1 Clostridioides difficile FD009 DNA, sequence279, whole genome shotgun sequence

⇒Summary: seq-len = 4773 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 287-4770 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 287-1201 bp Gene: pfam01881:cas6 Type: other Location: 1279-2016 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 2022-3872 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 3874-4770 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIND01000297.1 Clostridioides difficile FD009 DNA, sequence297, whole genome shotgun sequence

⇒Summary: seq-len = 4280 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 159-4279 bp Zoom in on locus 1 Gene: cd09658:cas5 Type: Subtype-I-B Location: 159-860 bp Gene: COG1203:cas3 Type: Type-I Location: 871-3192 bp Gene: pfam01930:cas4 Type: Type-I Location: 3207-3758 bp Gene: COG1518:cas1 Type: universal Location: 3761-4279 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIND01000256.1 Clostridioides difficile FD009 DNA, sequence256, whole genome shotgun sequence

⇒Summary: seq-len = 5168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-85 bp Zoom in on locus 1 x2 CRISPR array Location: 0-85 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-85 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-85 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIND01000123.1 Clostridioides difficile FD009 DNA, sequence123, whole genome shotgun sequence

⇒Summary: seq-len = 10275 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 529-4790 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 529-1542 bp Gene: cd09693:cas5 Type: Type-I Location: 1558-2355 bp Gene: cd09641:cas3HD Type: Type-I Location: 2382-4790 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIND01000366.1 Clostridioides difficile FD009 DNA, sequence366, whole genome shotgun sequence

⇒Summary: seq-len = 2938 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-487 bp Zoom in on locus 1 x8 CRISPR array Location: 0-487 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-487 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIND01000336.1 Clostridioides difficile FD009 DNA, sequence336, whole genome shotgun sequence

⇒Summary: seq-len = 3483 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3205-3497 bp Zoom in on locus 1 x5 CRISPR array Location: 3205-3497 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3205-3497 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3205-3497 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIND01000160.1 Clostridioides difficile FD009 DNA, sequence160, whole genome shotgun sequence

⇒Summary: seq-len = 8102 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6398-7806 bp Zoom in on locus 1 x22 CRISPR array Location: 6398-7806 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 6398-7806 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6398-7806 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIND01000467.1 Clostridioides difficile FD009 DNA, sequence467, whole genome shotgun sequence

⇒Summary: seq-len = 1579 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1577 bp Zoom in on locus 1 x15 CRISPR array Location: 0-957 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 0-957 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam09827:cas2 Type: universal Location: 1114-1305 bp Gene: COG1518:cas1 Type: universal Location: 1308-1577 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-957 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIND01000345.1 Clostridioides difficile FD009 DNA, sequence345, whole genome shotgun sequence

⇒Summary: seq-len = 3298 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1729-1953 bp Zoom in on locus 1 x4 CRISPR array Location: 1729-1953 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1729-1953 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1729-1953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIND01000342.1 Clostridioides difficile FD009 DNA, sequence342, whole genome shotgun sequence

⇒Summary: seq-len = 3365 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2604-3294 bp Zoom in on locus 1 x11 CRISPR array Location: 2604-3294 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2604-3294 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2604-3294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)