CRISPRone

CRISPRone report for GCA_004313865.1_ASM431386v1

♦ Seq 1: BINE01000090.1 Clostridioides difficile FD010 DNA, sequence090, whole genome shotgun sequence

⇒Summary: seq-len = 12289 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6137-12287 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 6137-8545 bp Gene: cd09693:cas5 Type: Type-I Location: 8572-9369 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 9385-10398 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 10418-11884 bp Gene: pfam01881:cas6 Type: other Location: 11889-12287 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINE01000375.1 Clostridioides difficile FD010 DNA, sequence375, whole genome shotgun sequence

⇒Summary: seq-len = 3139 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-415 bp Zoom in on locus 1 x7 CRISPR array Location: 0-415 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-415 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-415 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINE01000275.1 Clostridioides difficile FD010 DNA, sequence275, whole genome shotgun sequence

⇒Summary: seq-len = 4907 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-97 bp Zoom in on locus 1 x2 CRISPR array Location: 3-97 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3-97 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3-97 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINE01000180.1 Clostridioides difficile FD010 DNA, sequence180, whole genome shotgun sequence

⇒Summary: seq-len = 7517 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5521-5681 bp Zoom in on locus 1 x3 CRISPR array Location: 5521-5681 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5521-5681 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5521-5681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINE01000350.1 Clostridioides difficile FD010 DNA, sequence350, whole genome shotgun sequence

⇒Summary: seq-len = 3616 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 542-899 bp Zoom in on locus 1 x6 CRISPR array Location: 542-899 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 542-899 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 542-899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINE01000461.1 Clostridioides difficile FD010 DNA, sequence461, whole genome shotgun sequence

⇒Summary: seq-len = 1967 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 284-379 bp Zoom in on locus 1 x2 CRISPR array Location: 284-379 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 284-379 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 284-379 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINE01000166.1 Clostridioides difficile FD010 DNA, sequence166, whole genome shotgun sequence

⇒Summary: seq-len = 8081 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3047-3536 bp Zoom in on locus 1 x8 CRISPR array Location: 3047-3536 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3047-3536 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3047-3536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINE01000215.1 Clostridioides difficile FD010 DNA, sequence215, whole genome shotgun sequence

⇒Summary: seq-len = 6545 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3502-6557 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 3502-3729 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3502-3729 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6396-6557 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 6396-6557 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3502-3729 bp]: array | spacers
           [Locus range 6396-6557 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)