CRISPRone

CRISPRone report for GCA_004313905.1_ASM431390v1

♦ Seq 1: BING01000231.1 Clostridioides difficile FD012 DNA, sequence231, whole genome shotgun sequence

⇒Summary: seq-len = 5894 bp; # of CRISPR array = 1; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-5905 bp Zoom in on locus 1 x7 Gene: cd09687:cas7 Type: Subtype-I-B Location: 1-444 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 446-1147 bp Gene: COG1203:cas3 Type: Type-I Location: 1158-3479 bp Gene: pfam01930:cas4 Type: Type-I Location: 3494-4045 bp Gene: cd09722:cas1 Type: universal Location: 4048-5028 bp Gene: cd09725:cas2 Type: universal Location: 5031-5297 bp CRISPR array Location: 5481-5905 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5481-5905 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5481-5905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BING01000289.1 Clostridioides difficile FD012 DNA, sequence289, whole genome shotgun sequence

⇒Summary: seq-len = 4727 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-4725 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 3-662 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 667-2142 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2162-3175 bp Gene: cd09693:cas5 Type: Type-I Location: 3191-3988 bp Gene: cd09641:cas3HD Type: Type-I Location: 4015-4725 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BING01000224.1 Clostridioides difficile FD012 DNA, sequence224, whole genome shotgun sequence

⇒Summary: seq-len = 6068 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4537-6083 bp Zoom in on locus 1 x24 CRISPR array Location: 4537-6083 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 4537-6083 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4537-6083 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BING01000164.1 Clostridioides difficile FD012 DNA, sequence164, whole genome shotgun sequence

⇒Summary: seq-len = 8267 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 910-1004 bp Zoom in on locus 1 x2 CRISPR array Location: 910-1004 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 910-1004 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 910-1004 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BING01000249.1 Clostridioides difficile FD012 DNA, sequence249, whole genome shotgun sequence

⇒Summary: seq-len = 5541 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5261-5555 bp Zoom in on locus 1 x5 CRISPR array Location: 5261-5555 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5261-5555 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5261-5555 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BING01000062.1 Clostridioides difficile FD012 DNA, sequence062, whole genome shotgun sequence

⇒Summary: seq-len = 13804 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9611-13803 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 9611-10498 bp Gene: pfam01881:cas6 Type: other Location: 10576-11313 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11319-13169 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 13171-13803 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BING01000338.1 Clostridioides difficile FD012 DNA, sequence338, whole genome shotgun sequence

⇒Summary: seq-len = 3851 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1005 bp Zoom in on locus 1 x16 CRISPR array Location: 0-1005 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 0-1005 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1005 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BING01000487.1 Clostridioides difficile FD012 DNA, sequence487, whole genome shotgun sequence

⇒Summary: seq-len = 1724 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 911-1071 bp Zoom in on locus 1 x3 CRISPR array Location: 911-1071 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 911-1071 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 911-1071 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BING01000452.1 Clostridioides difficile FD012 DNA, sequence452, whole genome shotgun sequence

⇒Summary: seq-len = 2221 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1805-2229 bp Zoom in on locus 1 x7 CRISPR array Location: 1805-2229 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1805-2229 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1805-2229 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BING01000245.1 Clostridioides difficile FD012 DNA, sequence245, whole genome shotgun sequence

⇒Summary: seq-len = 5675 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4-169 bp Zoom in on locus 1 x3 CRISPR array Location: 4-169 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4-169 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4-169 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BING01000333.1 Clostridioides difficile FD012 DNA, sequence333, whole genome shotgun sequence

⇒Summary: seq-len = 3873 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1372-2056 bp Zoom in on locus 1 x11 CRISPR array Location: 1372-2056 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 1372-2056 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1372-2056 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BING01000080.1 Clostridioides difficile FD012 DNA, sequence080, whole genome shotgun sequence

⇒Summary: seq-len = 11977 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8679-9760 bp Zoom in on locus 1 x17 CRISPR array Location: 8679-9760 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 8679-9760 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8679-9760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)