CRISPRone

CRISPRone report for GCA_004313925.1_ASM431392v1

♦ Seq 1: BINH01000219.1 Clostridioides difficile FD013 DNA, sequence219, whole genome shotgun sequence

⇒Summary: seq-len = 6070 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5398-5956 bp Zoom in on locus 1 x9 CRISPR array Location: 5398-5956 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5398-5956 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5398-5956 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINH01000471.1 Clostridioides difficile FD013 DNA, sequence471, whole genome shotgun sequence

⇒Summary: seq-len = 1653 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 560-722 bp Zoom in on locus 1 x3 CRISPR array Location: 560-722 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 560-722 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 560-722 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINH01000451.1 Clostridioides difficile FD013 DNA, sequence451, whole genome shotgun sequence

⇒Summary: seq-len = 1896 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 706-1893 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 706-1719 bp Gene: cd09693:cas5 Type: Type-I Location: 1735-1893 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINH01000430.1 Clostridioides difficile FD013 DNA, sequence430, whole genome shotgun sequence

⇒Summary: seq-len = 2157 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2148 bp Zoom in on locus 1 x24 x8 CRISPR array Location: 0-1536 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 0-1536 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 1658-2148 bp Num of repeats: 8 Spacers: s24-s30 CRISPR array Location: 1658-2148 bp Num of repeats: 8 Spacers: s24-s30 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1536 bp]: array | spacers
           [Locus range 1658-2148 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINH01000488.1 Clostridioides difficile FD013 DNA, sequence488, whole genome shotgun sequence

⇒Summary: seq-len = 1431 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1429 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 3-932 bp Gene: cd09652:cas6 Type: other Location: 944-1429 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINH01000518.1 Clostridioides difficile FD013 DNA, sequence518, whole genome shotgun sequence

⇒Summary: seq-len = 1227 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1224 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 3-473 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 478-1224 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINH01000099.1 Clostridioides difficile FD013 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 11158 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2051-2343 bp Zoom in on locus 1 x5 CRISPR array Location: 2051-2343 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2051-2343 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2051-2343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINH01000197.1 Clostridioides difficile FD013 DNA, sequence197, whole genome shotgun sequence

⇒Summary: seq-len = 6632 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3326-4077 bp Zoom in on locus 1 x12 CRISPR array Location: 3326-4077 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3326-4077 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3326-4077 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINH01000438.1 Clostridioides difficile FD013 DNA, sequence438, whole genome shotgun sequence

⇒Summary: seq-len = 2057 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63-1794 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 63-803 bp Gene: pfam05107:cas7b Type: Type-I Location: 805-1794 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINH01000363.1 Clostridioides difficile FD013 DNA, sequence363, whole genome shotgun sequence

⇒Summary: seq-len = 2997 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2838-2998 bp Zoom in on locus 1 x3 CRISPR array Location: 2838-2998 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2838-2998 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2838-2998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINH01000426.1 Clostridioides difficile FD013 DNA, sequence426, whole genome shotgun sequence

⇒Summary: seq-len = 2206 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35-263 bp Zoom in on locus 1 x4 CRISPR array Location: 35-263 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 35-263 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35-263 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)