CRISPRone

CRISPRone report for GCA_004313945.1_ASM431394v1

♦ Seq 1: BINI01000520.1 Clostridioides difficile FD014 DNA, sequence520, whole genome shotgun sequence

⇒Summary: seq-len = 1200 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1061 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 2-349 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 360-1061 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINI01000298.1 Clostridioides difficile FD014 DNA, sequence298, whole genome shotgun sequence

⇒Summary: seq-len = 4140 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3887 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-2031 bp Gene: cd09693:cas5 Type: Type-I Location: 2058-2855 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2871-3887 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINI01000320.1 Clostridioides difficile FD014 DNA, sequence320, whole genome shotgun sequence

⇒Summary: seq-len = 3807 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-159 bp Zoom in on locus 1 x3 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-159 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-159 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINI01000315.1 Clostridioides difficile FD014 DNA, sequence315, whole genome shotgun sequence

⇒Summary: seq-len = 3844 bp; # of CRISPR array = 0; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3681 bp Zoom in on locus 1 Gene: COG1203:cas3 Type: Type-I Location: 1-1863 bp Gene: pfam01930:cas4 Type: Type-I Location: 1878-2429 bp Gene: cd09722:cas1 Type: universal Location: 2432-3412 bp Gene: cd09725:cas2 Type: universal Location: 3415-3681 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINI01000157.1 Clostridioides difficile FD014 DNA, sequence157, whole genome shotgun sequence

⇒Summary: seq-len = 9050 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2095-2189 bp Zoom in on locus 1 x2 CRISPR array Location: 2095-2189 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2095-2189 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2095-2189 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINI01000001.1 Clostridioides difficile FD014 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 56126 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14998-19731 bp Zoom in on locus 1 x14 x3 x5 CRISPR array Location: 14998-15883 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 14998-15883 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 17677-17834 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 17677-17834 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 19439-19731 bp Num of repeats: 5 Spacers: s16-s19 CRISPR array Location: 19439-19731 bp Num of repeats: 5 Spacers: s16-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14998-15883 bp]: array | spacers
           [Locus range 17677-17834 bp]: array | spacers
           [Locus range 19439-19731 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINI01000331.1 Clostridioides difficile FD014 DNA, sequence331, whole genome shotgun sequence

⇒Summary: seq-len = 3548 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2702-3524 bp Zoom in on locus 1 x13 CRISPR array Location: 2702-3524 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 2702-3524 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2702-3524 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINI01000257.1 Clostridioides difficile FD014 DNA, sequence257, whole genome shotgun sequence

⇒Summary: seq-len = 5129 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4034-4391 bp Zoom in on locus 1 x6 CRISPR array Location: 4034-4391 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4034-4391 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4034-4391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINI01000448.1 Clostridioides difficile FD014 DNA, sequence448, whole genome shotgun sequence

⇒Summary: seq-len = 1916 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1844 bp Zoom in on locus 1 Gene: cd09754:cas8b2 Type: Subtype-I-B Location: 2-1225 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1227-1844 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINI01000115.1 Clostridioides difficile FD014 DNA, sequence115, whole genome shotgun sequence

⇒Summary: seq-len = 10708 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8937-9553 bp Zoom in on locus 1 x10 CRISPR array Location: 8937-9553 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 8937-9553 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8937-9553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINI01000534.1 Clostridioides difficile FD014 DNA, sequence534, whole genome shotgun sequence

⇒Summary: seq-len = 1110 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1111 bp Zoom in on locus 1 x4 Gene: cd09634:cas1 Type: universal Location: 2-433 bp Gene: cd09725:cas2 Type: universal Location: 436-702 bp CRISPR array Location: 886-1111 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 886-1111 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 886-1111 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BINI01000128.1 Clostridioides difficile FD014 DNA, sequence128, whole genome shotgun sequence

⇒Summary: seq-len = 10250 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7282-7443 bp Zoom in on locus 1 x3 CRISPR array Location: 7282-7443 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7282-7443 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7282-7443 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BINI01000089.1 Clostridioides difficile FD014 DNA, sequence089, whole genome shotgun sequence

⇒Summary: seq-len = 12061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9038-10187 bp Zoom in on locus 1 x18 CRISPR array Location: 9038-10187 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 9038-10187 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9038-10187 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)