CRISPRone

CRISPRone report for GCA_004314005.1_ASM431400v1

♦ Seq 1: BINL01000059.1 Clostridioides difficile FD017 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 20313 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17198-17358 bp Zoom in on locus 1 x3 CRISPR array Location: 17198-17358 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 17198-17358 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17198-17358 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINL01000096.1 Clostridioides difficile FD017 DNA, sequence096, whole genome shotgun sequence

⇒Summary: seq-len = 14722 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3839-4396 bp Zoom in on locus 1 x9 CRISPR array Location: 3839-4396 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3839-4396 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3839-4396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINL01000153.1 Clostridioides difficile FD017 DNA, sequence153, whole genome shotgun sequence

⇒Summary: seq-len = 8895 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8605-8898 bp Zoom in on locus 1 x5 CRISPR array Location: 8605-8898 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8605-8898 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8605-8898 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINL01000068.1 Clostridioides difficile FD017 DNA, sequence068, whole genome shotgun sequence

⇒Summary: seq-len = 17415 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2177-2403 bp Zoom in on locus 1 x4 CRISPR array Location: 2177-2403 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2177-2403 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2177-2403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINL01000290.1 Clostridioides difficile FD017 DNA, sequence290, whole genome shotgun sequence

⇒Summary: seq-len = 2705 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-350 bp Zoom in on locus 1 x6 CRISPR array Location: 0-350 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-350 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINL01000253.1 Clostridioides difficile FD017 DNA, sequence253, whole genome shotgun sequence

⇒Summary: seq-len = 3825 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 858-1020 bp Zoom in on locus 1 x3 CRISPR array Location: 858-1020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 858-1020 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 858-1020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINL01000301.1 Clostridioides difficile FD017 DNA, sequence301, whole genome shotgun sequence

⇒Summary: seq-len = 2439 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 80-2436 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 80-820 bp Gene: pfam05107:cas7b Type: Type-I Location: 822-1811 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1804-2436 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINL01000022.1 Clostridioides difficile FD017 DNA, sequence022, whole genome shotgun sequence

⇒Summary: seq-len = 34092 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33682-34103 bp Zoom in on locus 1 x7 CRISPR array Location: 33682-34103 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 33682-34103 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33682-34103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINL01000188.1 Clostridioides difficile FD017 DNA, sequence188, whole genome shotgun sequence

⇒Summary: seq-len = 7115 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-7113 bp Zoom in on locus 1 x46 Gene: cd09641:cas3HD Type: Type-I Location: 3-2360 bp CRISPR array Location: 2550-5553 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 2550-5553 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 5637-6131 bp Gene: cd09722:cas1 Type: universal Location: 6157-7113 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2550-5553 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINL01000052.1 Clostridioides difficile FD017 DNA, sequence052, whole genome shotgun sequence

⇒Summary: seq-len = 21019 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16723-20336 bp Zoom in on locus 1 x13 x8 CRISPR array Location: 16723-17545 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 16723-17545 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 19849-20336 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 19849-20336 bp Num of repeats: 8 Spacers: s13-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16723-17545 bp]: array | spacers
           [Locus range 19849-20336 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINL01000012.1 Clostridioides difficile FD017 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 38739 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 689-4950 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 689-1702 bp Gene: cd09693:cas5 Type: Type-I Location: 1718-2515 bp Gene: cd09641:cas3HD Type: Type-I Location: 2542-4950 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BINL01000321.1 Clostridioides difficile FD017 DNA, sequence321, whole genome shotgun sequence

⇒Summary: seq-len = 1835 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1545 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2-1099 bp Gene: cd09652:cas6 Type: other Location: 1111-1545 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)