CRISPRone

CRISPRone report for GCA_004314025.1_ASM431402v1

♦ Seq 1: BINM01000041.1 Clostridioides difficile FD018 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 27211 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14404-14498 bp Zoom in on locus 1 x2 CRISPR array Location: 14404-14498 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 14404-14498 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14404-14498 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINM01000155.1 Clostridioides difficile FD018 DNA, sequence155, whole genome shotgun sequence

⇒Summary: seq-len = 7099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1056-1216 bp Zoom in on locus 1 x3 CRISPR array Location: 1056-1216 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1056-1216 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1056-1216 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINM01000150.1 Clostridioides difficile FD018 DNA, sequence150, whole genome shotgun sequence

⇒Summary: seq-len = 7694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5057-5549 bp Zoom in on locus 1 x8 CRISPR array Location: 5057-5549 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5057-5549 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5057-5549 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINM01000003.1 Clostridioides difficile FD018 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 80924 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62208-70529 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 62208-64616 bp Gene: cd09693:cas5 Type: Type-I Location: 64643-65440 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 65456-66472 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 66492-67967 bp Gene: pfam01881:cas6 Type: other Location: 67972-68709 bp Gene: unk Type: unknown Location: 68810-68986 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 69420-70529 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINM01000028.1 Clostridioides difficile FD018 DNA, sequence028, whole genome shotgun sequence

⇒Summary: seq-len = 33759 bp; # of CRISPR array = 0; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25163-33756 bp Zoom in on locus 1 Gene: pfam13280:WYL Type: other Location: 25163-26050 bp Gene: pfam01881:cas6 Type: other Location: 26128-26865 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 26871-28721 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 28723-29637 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 29639-30340 bp Gene: COG1203:cas3 Type: Type-I Location: 30351-32672 bp Gene: pfam01930:cas4 Type: Type-I Location: 32687-33238 bp Gene: COG1518:cas1 Type: universal Location: 33241-33756 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINM01000284.1 Clostridioides difficile FD018 DNA, sequence284, whole genome shotgun sequence

⇒Summary: seq-len = 1029 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1029 bp Zoom in on locus 1 x2 Gene: cd09634:cas1 Type: universal Location: 2-481 bp Gene: cd09725:cas2 Type: universal Location: 484-750 bp CRISPR array Location: 934-1029 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 934-1029 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 934-1029 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINM01000043.1 Clostridioides difficile FD018 DNA, sequence043, whole genome shotgun sequence

⇒Summary: seq-len = 27098 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26030-27114 bp Zoom in on locus 1 x17 CRISPR array Location: 26030-27114 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 26030-27114 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 26030-27114 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINM01000097.1 Clostridioides difficile FD018 DNA, sequence097, whole genome shotgun sequence

⇒Summary: seq-len = 15881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 14642-15791 bp Zoom in on locus 1 x18 CRISPR array Location: 14642-15791 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 14642-15791 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 14642-15791 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINM01000147.1 Clostridioides difficile FD018 DNA, sequence147, whole genome shotgun sequence

⇒Summary: seq-len = 8530 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3172-3464 bp Zoom in on locus 1 x5 CRISPR array Location: 3172-3464 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 3172-3464 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3172-3464 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINM01000176.1 Clostridioides difficile FD018 DNA, sequence176, whole genome shotgun sequence

⇒Summary: seq-len = 5793 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5260-5618 bp Zoom in on locus 1 x6 CRISPR array Location: 5260-5618 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5260-5618 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5260-5618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)