CRISPRone

CRISPRone report for GCA_004314045.1_ASM431404v1

♦ Seq 1: BINN01000001.1 Clostridioides difficile FD019 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 262466 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 202533-203019 bp Zoom in on locus 1 x8 CRISPR array Location: 202533-203019 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 202533-203019 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 202533-203019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINN01000007.1 Clostridioides difficile FD019 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 129998 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 49477-57342 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 49477-50586 bp Gene: pfam01881:cas6 Type: other Location: 50844-51581 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 51586-53061 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 53081-54094 bp Gene: cd09693:cas5 Type: Type-I Location: 54110-54907 bp Gene: cd09641:cas3HD Type: Type-I Location: 54934-57342 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINN01000008.1 Clostridioides difficile FD019 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 126408 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 102145-102703 bp Zoom in on locus 1 x9 CRISPR array Location: 102145-102703 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 102145-102703 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 102145-102703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINN01000009.1 Clostridioides difficile FD019 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 119884 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 113943-114170 bp Zoom in on locus 1 x4 CRISPR array Location: 113943-114170 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 113943-114170 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 113943-114170 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINN01000014.1 Clostridioides difficile FD019 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 91771 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 53136-53496 bp Zoom in on locus 1 x6 CRISPR array Location: 53136-53496 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 53136-53496 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 53136-53496 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINN01000047.1 Clostridioides difficile FD019 DNA, sequence047, whole genome shotgun sequence

⇒Summary: seq-len = 25019 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5226-5387 bp Zoom in on locus 1 x3 CRISPR array Location: 5226-5387 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5226-5387 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5226-5387 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINN01000010.1 Clostridioides difficile FD019 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 115706 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112633-112859 bp Zoom in on locus 1 x4 CRISPR array Location: 112633-112859 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 112633-112859 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112633-112859 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINN01000023.1 Clostridioides difficile FD019 DNA, sequence023, whole genome shotgun sequence

⇒Summary: seq-len = 61838 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25936-26359 bp Zoom in on locus 1 x7 CRISPR array Location: 25936-26359 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 25936-26359 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25936-26359 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINN01000015.1 Clostridioides difficile FD019 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 89455 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 77194-89316 bp Zoom in on locus 1 x47 Gene: cd09725:cas2 Type: universal Location: 77194-77484 bp Gene: cd09722:cas1 Type: universal Location: 77695-78702 bp Gene: pfam01930:cas4 Type: Type-I Location: 78728-79222 bp CRISPR array Location: 79307-82374 bp Num of repeats: 47 Spacers: s1-s46 CRISPR array Location: 79307-82374 bp Num of repeats: 47 Spacers: s1-s46 Gene: cd09641:cas3HD Type: Type-I Location: 82564-85122 bp Gene: cd09693:cas5 Type: Type-I Location: 85146-85886 bp Gene: pfam05107:cas7b Type: Type-I Location: 85888-86877 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 86870-88609 bp Gene: cd09652:cas6 Type: other Location: 88621-89316 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 79307-82374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)