CRISPRone

CRISPRone report for GCA_004314065.1_ASM431406v1

♦ Seq 1: BINO01000250.1 Clostridioides difficile FD021 DNA, sequence250, whole genome shotgun sequence

⇒Summary: seq-len = 4711 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100-4708 bp Zoom in on locus 1 x46 CRISPR array Location: 100-3103 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 100-3103 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 3187-3681 bp Gene: cd09722:cas1 Type: universal Location: 3707-4708 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 100-3103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINO01000364.1 Clostridioides difficile FD021 DNA, sequence364, whole genome shotgun sequence

⇒Summary: seq-len = 1930 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 735-897 bp Zoom in on locus 1 x3 CRISPR array Location: 735-897 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 735-897 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 735-897 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINO01000158.1 Clostridioides difficile FD021 DNA, sequence158, whole genome shotgun sequence

⇒Summary: seq-len = 8394 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8249-8411 bp Zoom in on locus 1 x3 CRISPR array Location: 8249-8411 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 8249-8411 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8249-8411 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINO01000167.1 Clostridioides difficile FD021 DNA, sequence167, whole genome shotgun sequence

⇒Summary: seq-len = 8011 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4853-5603 bp Zoom in on locus 1 x12 CRISPR array Location: 4853-5603 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4853-5603 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4853-5603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINO01000362.1 Clostridioides difficile FD021 DNA, sequence362, whole genome shotgun sequence

⇒Summary: seq-len = 1963 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 243-1962 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 243-983 bp Gene: pfam05107:cas7b Type: Type-I Location: 985-1962 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINO01000122.1 Clostridioides difficile FD021 DNA, sequence122, whole genome shotgun sequence

⇒Summary: seq-len = 10771 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92-384 bp Zoom in on locus 1 x5 CRISPR array Location: 92-384 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 92-384 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92-384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINO01000048.1 Clostridioides difficile FD021 DNA, sequence048, whole genome shotgun sequence

⇒Summary: seq-len = 20265 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4016-4573 bp Zoom in on locus 1 x9 CRISPR array Location: 4016-4573 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4016-4573 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4016-4573 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINO01000061.1 Clostridioides difficile FD021 DNA, sequence061, whole genome shotgun sequence

⇒Summary: seq-len = 17641 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-419 bp Zoom in on locus 1 x4 CRISPR array Location: 192-419 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 192-419 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192-419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINO01000274.1 Clostridioides difficile FD021 DNA, sequence274, whole genome shotgun sequence

⇒Summary: seq-len = 3947 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3728 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 1-402 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 407-1882 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1902-2915 bp Gene: cd09693:cas5 Type: Type-I Location: 2931-3728 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINO01000183.1 Clostridioides difficile FD021 DNA, sequence183, whole genome shotgun sequence

⇒Summary: seq-len = 7330 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5426-5846 bp Zoom in on locus 1 x7 CRISPR array Location: 5426-5846 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5426-5846 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5426-5846 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)