CRISPRone

CRISPRone report for GCA_004314085.1_ASM431408v1

♦ Seq 1: BINP01000014.1 Clostridioides difficile FD023 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 93794 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73379-73539 bp Zoom in on locus 1 x3 CRISPR array Location: 73379-73539 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 73379-73539 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73379-73539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINP01000041.1 Clostridioides difficile FD023 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 38913 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-482 bp Zoom in on locus 1 x8 CRISPR array Location: 0-482 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-482 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINP01000017.1 Clostridioides difficile FD023 DNA, sequence017, whole genome shotgun sequence

⇒Summary: seq-len = 80613 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 75034-75391 bp Zoom in on locus 1 x6 CRISPR array Location: 75034-75391 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 75034-75391 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 75034-75391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINP01000063.1 Clostridioides difficile FD023 DNA, sequence063, whole genome shotgun sequence

⇒Summary: seq-len = 19425 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18044-18801 bp Zoom in on locus 1 x12 CRISPR array Location: 18044-18801 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 18044-18801 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18044-18801 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINP01000044.1 Clostridioides difficile FD023 DNA, sequence044, whole genome shotgun sequence

⇒Summary: seq-len = 37107 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33809-34100 bp Zoom in on locus 1 x5 CRISPR array Location: 33809-34100 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 33809-34100 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33809-34100 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINP01000059.1 Clostridioides difficile FD023 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 22664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17935-19084 bp Zoom in on locus 1 x18 CRISPR array Location: 17935-19084 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 17935-19084 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17935-19084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINP01000002.1 Clostridioides difficile FD023 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 169300 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 160317-160410 bp Zoom in on locus 1 x2 CRISPR array Location: 160317-160410 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 160317-160410 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 160317-160410 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINP01000009.1 Clostridioides difficile FD023 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 110677 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 100795-101944 bp Zoom in on locus 1 x18 CRISPR array Location: 100795-101944 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 100795-101944 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 100795-101944 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINP01000040.1 Clostridioides difficile FD023 DNA, sequence040, whole genome shotgun sequence

⇒Summary: seq-len = 39013 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32445-38946 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 32445-34853 bp Gene: cd09693:cas5 Type: Type-I Location: 34880-35677 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 35693-36709 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 36729-38204 bp Gene: pfam01881:cas6 Type: other Location: 38209-38946 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINP01000012.1 Clostridioides difficile FD023 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 102470 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61840-72886 bp Zoom in on locus 1 x24 Gene: pfam13280:WYL Type: other Location: 61840-62727 bp Gene: pfam01881:cas6 Type: other Location: 62805-63542 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 63548-65398 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 65400-66314 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 66316-67017 bp Gene: COG1203:cas3 Type: Type-I Location: 67028-69349 bp Gene: pfam01930:cas4 Type: Type-I Location: 69364-69915 bp Gene: cd09722:cas1 Type: universal Location: 69918-70898 bp Gene: cd09725:cas2 Type: universal Location: 70901-71167 bp CRISPR array Location: 71351-72886 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 71351-72886 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71351-72886 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)