CRISPRone

CRISPRone report for GCA_004314105.1_ASM431410v1

♦ Seq 1: BINQ01000579.1 Clostridioides difficile FD024 DNA, sequence579, whole genome shotgun sequence

⇒Summary: seq-len = 1046 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1043 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 2-553 bp Gene: pfam05107:cas7b Type: Type-I Location: 555-1043 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINQ01000316.1 Clostridioides difficile FD024 DNA, sequence316, whole genome shotgun sequence

⇒Summary: seq-len = 4074 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2646-3066 bp Zoom in on locus 1 x7 CRISPR array Location: 2646-3066 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2646-3066 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2646-3066 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINQ01000454.1 Clostridioides difficile FD024 DNA, sequence454, whole genome shotgun sequence

⇒Summary: seq-len = 2294 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1944-2305 bp Zoom in on locus 1 x6 CRISPR array Location: 1944-2305 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1944-2305 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1944-2305 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINQ01000280.1 Clostridioides difficile FD024 DNA, sequence280, whole genome shotgun sequence

⇒Summary: seq-len = 4744 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2572 bp Zoom in on locus 1 x8 x4 CRISPR array Location: 0-484 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 0-484 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2347-2572 bp Num of repeats: 4 Spacers: s8-s10 CRISPR array Location: 2347-2572 bp Num of repeats: 4 Spacers: s8-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-484 bp]: array | spacers
           [Locus range 2347-2572 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINQ01000249.1 Clostridioides difficile FD024 DNA, sequence249, whole genome shotgun sequence

⇒Summary: seq-len = 5420 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1312-2261 bp Zoom in on locus 1 x15 CRISPR array Location: 1312-2261 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 1312-2261 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1312-2261 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINQ01000523.1 Clostridioides difficile FD024 DNA, sequence523, whole genome shotgun sequence

⇒Summary: seq-len = 1547 bp; # of CRISPR array = 0; # of cas gene = 1  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-1545 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-1545 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINQ01000100.1 Clostridioides difficile FD024 DNA, sequence100, whole genome shotgun sequence

⇒Summary: seq-len = 10847 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99-391 bp Zoom in on locus 1 x5 CRISPR array Location: 99-391 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 99-391 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 99-391 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINQ01000319.1 Clostridioides difficile FD024 DNA, sequence319, whole genome shotgun sequence

⇒Summary: seq-len = 4037 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-4034 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 2-325 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 330-1805 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1825-2838 bp Gene: cd09693:cas5 Type: Type-I Location: 2854-3651 bp Gene: cd09641:cas3HD Type: Type-I Location: 3678-4034 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINQ01000520.1 Clostridioides difficile FD024 DNA, sequence520, whole genome shotgun sequence

⇒Summary: seq-len = 1565 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-1396 bp Zoom in on locus 1 Gene: cd09634:cas1 Type: universal Location: 3-587 bp Gene: pfam01930:cas4 Type: Type-I Location: 902-1396 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINQ01000518.1 Clostridioides difficile FD024 DNA, sequence518, whole genome shotgun sequence

⇒Summary: seq-len = 1569 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1079-1240 bp Zoom in on locus 1 x3 CRISPR array Location: 1079-1240 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1079-1240 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1079-1240 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINQ01000086.1 Clostridioides difficile FD024 DNA, sequence086, whole genome shotgun sequence

⇒Summary: seq-len = 11599 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 768-1325 bp Zoom in on locus 1 x9 CRISPR array Location: 768-1325 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 768-1325 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 768-1325 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BINQ01000394.1 Clostridioides difficile FD024 DNA, sequence394, whole genome shotgun sequence

⇒Summary: seq-len = 2925 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2767-2927 bp Zoom in on locus 1 x3 CRISPR array Location: 2767-2927 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2767-2927 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2767-2927 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BINQ01000512.1 Clostridioides difficile FD024 DNA, sequence512, whole genome shotgun sequence

⇒Summary: seq-len = 1604 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1603 bp Zoom in on locus 1 x25 CRISPR array Location: 0-1603 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 0-1603 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1603 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)