CRISPRone

CRISPRone report for GCA_004314125.1_ASM431412v1

♦ Seq 1: BINR01000034.1 Clostridioides difficile FD025 DNA, sequence034, whole genome shotgun sequence

⇒Summary: seq-len = 22598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2019-3364 bp Zoom in on locus 1 x21 CRISPR array Location: 2019-3364 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 2019-3364 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2019-3364 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINR01000422.1 Clostridioides difficile FD025 DNA, sequence422, whole genome shotgun sequence

⇒Summary: seq-len = 1302 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 889-1312 bp Zoom in on locus 1 x7 CRISPR array Location: 889-1312 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 889-1312 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 889-1312 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINR01000170.1 Clostridioides difficile FD025 DNA, sequence170, whole genome shotgun sequence

⇒Summary: seq-len = 8562 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3081-3765 bp Zoom in on locus 1 x11 CRISPR array Location: 3081-3765 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 3081-3765 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3081-3765 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINR01000086.1 Clostridioides difficile FD025 DNA, sequence086, whole genome shotgun sequence

⇒Summary: seq-len = 14652 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 65-158 bp Zoom in on locus 1 x2 CRISPR array Location: 65-158 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 65-158 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 65-158 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINR01000276.1 Clostridioides difficile FD025 DNA, sequence276, whole genome shotgun sequence

⇒Summary: seq-len = 4451 bp; # of CRISPR array = 1; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-4453 bp Zoom in on locus 1 x8 Gene: COG1203:cas3 Type: Type-I Location: 3-1961 bp Gene: pfam01930:cas4 Type: Type-I Location: 1976-2527 bp Gene: cd09722:cas1 Type: universal Location: 2530-3510 bp Gene: cd09725:cas2 Type: universal Location: 3513-3779 bp CRISPR array Location: 3963-4453 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3963-4453 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 3963-4453 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINR01000005.1 Clostridioides difficile FD025 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 41805 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-146 bp Zoom in on locus 1 x3 CRISPR array Location: 0-146 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-146 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-146 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINR01000322.1 Clostridioides difficile FD025 DNA, sequence322, whole genome shotgun sequence

⇒Summary: seq-len = 3244 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2834-3257 bp Zoom in on locus 1 x7 CRISPR array Location: 2834-3257 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2834-3257 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2834-3257 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINR01000082.1 Clostridioides difficile FD025 DNA, sequence082, whole genome shotgun sequence

⇒Summary: seq-len = 15254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12919-13080 bp Zoom in on locus 1 x3 CRISPR array Location: 12919-13080 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 12919-13080 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12919-13080 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINR01000301.1 Clostridioides difficile FD025 DNA, sequence301, whole genome shotgun sequence

⇒Summary: seq-len = 3817 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3816 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-810 bp Gene: cd09693:cas5 Type: Type-I Location: 837-1634 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1650-2663 bp Gene: unk Type: unknown Location: 2683-2946 bp Gene: unk Type: unknown Location: 2947-3129 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 3289-3816 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINR01000296.1 Clostridioides difficile FD025 DNA, sequence296, whole genome shotgun sequence

⇒Summary: seq-len = 3998 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96-3995 bp Zoom in on locus 1 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 96-1946 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1948-2862 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2864-3565 bp Gene: cd09641:cas3HD Type: Type-I Location: 3576-3995 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINR01000227.1 Clostridioides difficile FD025 DNA, sequence227, whole genome shotgun sequence

⇒Summary: seq-len = 5783 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61-1673 bp Zoom in on locus 1 x25 CRISPR array Location: 61-1673 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 61-1673 bp Num of repeats: 25 Spacers: s1-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 61-1673 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)