CRISPRone

CRISPRone report for GCA_004314165.1_ASM431416v1

♦ Seq 1: BINT01000017.1 Clostridioides difficile FD027 DNA, sequence017, whole genome shotgun sequence

⇒Summary: seq-len = 38851 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3861-4217 bp Zoom in on locus 1 x6 CRISPR array Location: 3861-4217 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3861-4217 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3861-4217 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINT01000047.1 Clostridioides difficile FD027 DNA, sequence047, whole genome shotgun sequence

⇒Summary: seq-len = 23768 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17842-18003 bp Zoom in on locus 1 x3 CRISPR array Location: 17842-18003 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 17842-18003 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17842-18003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINT01000122.1 Clostridioides difficile FD027 DNA, sequence122, whole genome shotgun sequence

⇒Summary: seq-len = 11739 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8095-8583 bp Zoom in on locus 1 x8 CRISPR array Location: 8095-8583 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 8095-8583 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8095-8583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINT01000035.1 Clostridioides difficile FD027 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 27644 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17718-27441 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 17718-20126 bp Gene: cd09693:cas5 Type: Type-I Location: 20153-20950 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 20966-21979 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 21999-23465 bp Gene: pfam01881:cas6 Type: other Location: 23470-24207 bp Gene: unk Type: unknown Location: 24521-24979 bp Gene: cas14:cas14 Type: Type-V Location: 25007-26179 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26332-27441 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINT01000006.1 Clostridioides difficile FD027 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 53025 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2846-2940 bp Zoom in on locus 1 x2 CRISPR array Location: 2846-2940 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 2846-2940 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2846-2940 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINT01000251.1 Clostridioides difficile FD027 DNA, sequence251, whole genome shotgun sequence

⇒Summary: seq-len = 2979 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2500-2990 bp Zoom in on locus 1 x8 CRISPR array Location: 2500-2990 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2500-2990 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2500-2990 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINT01000260.1 Clostridioides difficile FD027 DNA, sequence260, whole genome shotgun sequence

⇒Summary: seq-len = 2656 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-352 bp Zoom in on locus 1 x6 CRISPR array Location: 0-352 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 0-352 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-352 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)