CRISPRone

CRISPRone report for GCA_004314265.1_ASM431426v1

♦ Seq 1: BINY01000024.1 Clostridioides difficile FD032 DNA, sequence24, whole genome shotgun sequence

⇒Summary: seq-len = 56572 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17937-18297 bp Zoom in on locus 1 x6 CRISPR array Location: 17937-18297 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 17937-18297 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17937-18297 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINY01000029.1 Clostridioides difficile FD032 DNA, sequence29, whole genome shotgun sequence

⇒Summary: seq-len = 41658 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29726-41584 bp Zoom in on locus 1 x43 Gene: cd09725:cas2 Type: universal Location: 29726-30016 bp Gene: cd09722:cas1 Type: universal Location: 30227-31234 bp Gene: pfam01930:cas4 Type: Type-I Location: 31260-31754 bp CRISPR array Location: 31839-34642 bp Num of repeats: 43 Spacers: s1-s42 CRISPR array Location: 31839-34642 bp Num of repeats: 43 Spacers: s1-s42 Gene: cd09641:cas3HD Type: Type-I Location: 34832-37390 bp Gene: cd09693:cas5 Type: Type-I Location: 37414-38154 bp Gene: pfam05107:cas7b Type: Type-I Location: 38156-39145 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 39138-40877 bp Gene: cd09652:cas6 Type: other Location: 40889-41584 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31839-34642 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINY01000001.1 Clostridioides difficile FD032 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 319663 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 215582-216003 bp Zoom in on locus 1 x7 CRISPR array Location: 215582-216003 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 215582-216003 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 215582-216003 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINY01000002.1 Clostridioides difficile FD032 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 311475 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 149910-150072 bp Zoom in on locus 1 x3 CRISPR array Location: 149910-150072 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 149910-150072 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 149910-150072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINY01000027.1 Clostridioides difficile FD032 DNA, sequence27, whole genome shotgun sequence

⇒Summary: seq-len = 48613 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45036-45262 bp Zoom in on locus 1 x4 CRISPR array Location: 45036-45262 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 45036-45262 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45036-45262 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINY01000003.1 Clostridioides difficile FD032 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 281061 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 189325-190010 bp Zoom in on locus 1 x11 CRISPR array Location: 189325-190010 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 189325-190010 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 189325-190010 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINY01000004.1 Clostridioides difficile FD032 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 262741 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51746-59611 bp 2 Locus 2: 132859-133416 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 51746-54154 bp Gene: cd09693:cas5 Type: Type-I Location: 54181-54978 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54994-56007 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56027-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58502-59611 bp CRISPR array Location: 132859-133416 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 132859-133416 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132859-133416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINY01000041.1 Clostridioides difficile FD032 DNA, sequence41, whole genome shotgun sequence

⇒Summary: seq-len = 12736 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7369-7661 bp Zoom in on locus 1 x5 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7369-7661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)