CRISPRone

CRISPRone report for GCA_004314285.1_ASM431428v1

♦ Seq 1: BINZ01000285.1 Clostridioides difficile FD033 DNA, sequence285, whole genome shotgun sequence

⇒Summary: seq-len = 1741 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 266-1740 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 266-961 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 973-1740 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BINZ01000191.1 Clostridioides difficile FD033 DNA, sequence191, whole genome shotgun sequence

⇒Summary: seq-len = 5908 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4977-5728 bp Zoom in on locus 1 x12 CRISPR array Location: 4977-5728 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 4977-5728 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4977-5728 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BINZ01000257.1 Clostridioides difficile FD033 DNA, sequence257, whole genome shotgun sequence

⇒Summary: seq-len = 3320 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3077 bp Zoom in on locus 1 Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 1-1353 bp Gene: pfam05107:cas7b Type: Type-I Location: 1346-2335 bp Gene: cd09693:cas5 Type: Type-I Location: 2337-3077 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BINZ01000001.1 Clostridioides difficile FD033 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 103212 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2136-2428 bp Zoom in on locus 1 x5 CRISPR array Location: 2136-2428 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2136-2428 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2136-2428 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BINZ01000200.1 Clostridioides difficile FD033 DNA, sequence200, whole genome shotgun sequence

⇒Summary: seq-len = 5625 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5624 bp Zoom in on locus 1 x44 Gene: cd09639:cas3 Type: Type-I Location: 2-967 bp CRISPR array Location: 1157-4028 bp Num of repeats: 44 Spacers: s1-s43 CRISPR array Location: 1157-4028 bp Num of repeats: 44 Spacers: s1-s43 Gene: pfam01930:cas4 Type: Type-I Location: 4112-4606 bp Gene: cd09722:cas1 Type: universal Location: 4632-5624 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1157-4028 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BINZ01000144.1 Clostridioides difficile FD033 DNA, sequence144, whole genome shotgun sequence

⇒Summary: seq-len = 9804 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5387-5945 bp Zoom in on locus 1 x9 CRISPR array Location: 5387-5945 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 5387-5945 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5387-5945 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BINZ01000041.1 Clostridioides difficile FD033 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 27559 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24444-24670 bp Zoom in on locus 1 x4 CRISPR array Location: 24444-24670 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 24444-24670 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 24444-24670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BINZ01000192.1 Clostridioides difficile FD033 DNA, sequence192, whole genome shotgun sequence

⇒Summary: seq-len = 5874 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5524-5885 bp Zoom in on locus 1 x6 CRISPR array Location: 5524-5885 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5524-5885 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5524-5885 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BINZ01000058.1 Clostridioides difficile FD033 DNA, sequence058, whole genome shotgun sequence

⇒Summary: seq-len = 22497 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 522-4783 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 522-1535 bp Gene: cd09693:cas5 Type: Type-I Location: 1551-2348 bp Gene: cd09641:cas3HD Type: Type-I Location: 2375-4783 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BINZ01000223.1 Clostridioides difficile FD033 DNA, sequence223, whole genome shotgun sequence

⇒Summary: seq-len = 4423 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1456-1618 bp Zoom in on locus 1 x3 CRISPR array Location: 1456-1618 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1456-1618 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1456-1618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BINZ01000284.1 Clostridioides difficile FD033 DNA, sequence284, whole genome shotgun sequence

⇒Summary: seq-len = 1843 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1718 bp Zoom in on locus 1 Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 2-976 bp Gene: pfam01881:cas6 Type: other Location: 981-1718 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BINZ01000158.1 Clostridioides difficile FD033 DNA, sequence158, whole genome shotgun sequence

⇒Summary: seq-len = 8216 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1995-2416 bp Zoom in on locus 1 x7 CRISPR array Location: 1995-2416 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1995-2416 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1995-2416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)