CRISPRone

CRISPRone report for GCA_004314365.1_ASM431436v1

♦ Seq 1: BIOD01000005.1 Clostridioides difficile FD037 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 234568 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29726-41518 bp 2 Locus 2: 231002-231752 bp Zoom in on locus 1 x42 Zoom in on locus 2 x12 Gene: cd09725:cas2 Type: universal Location: 29726-30016 bp Gene: cd09722:cas1 Type: universal Location: 30227-31234 bp Gene: pfam01930:cas4 Type: Type-I Location: 31260-31754 bp CRISPR array Location: 31839-34576 bp Num of repeats: 42 Spacers: s1-s41 CRISPR array Location: 31839-34576 bp Num of repeats: 42 Spacers: s1-s41 Gene: cd09641:cas3HD Type: Type-I Location: 34766-37324 bp Gene: cd09693:cas5 Type: Type-I Location: 37348-38088 bp Gene: pfam05107:cas7b Type: Type-I Location: 38090-39079 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 39072-40811 bp Gene: cd09652:cas6 Type: other Location: 40823-41518 bp CRISPR array Location: 231002-231752 bp Num of repeats: 12 Spacers: s42-s52 CRISPR array Location: 231002-231752 bp Num of repeats: 12 Spacers: s42-s52 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 31839-34576 bp]: array | spacers
           [Locus range 231002-231752 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOD01000012.1 Clostridioides difficile FD037 DNA, sequence12, whole genome shotgun sequence

⇒Summary: seq-len = 129988 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56417-56579 bp Zoom in on locus 1 x3 CRISPR array Location: 56417-56579 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 56417-56579 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56417-56579 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOD01000003.1 Clostridioides difficile FD037 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 335157 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51746-59611 bp 2 Locus 2: 132859-133020 bp Zoom in on locus 1 Zoom in on locus 2 x3 Gene: cd09641:cas3HD Type: Type-I Location: 51746-54154 bp Gene: cd09693:cas5 Type: Type-I Location: 54181-54978 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54994-56007 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56027-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58502-59611 bp CRISPR array Location: 132859-133020 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 132859-133020 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132859-133020 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOD01000035.1 Clostridioides difficile FD037 DNA, sequence35, whole genome shotgun sequence

⇒Summary: seq-len = 12736 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5076-5369 bp Zoom in on locus 1 x5 CRISPR array Location: 5076-5369 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5076-5369 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5076-5369 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOD01000020.1 Clostridioides difficile FD037 DNA, sequence20, whole genome shotgun sequence

⇒Summary: seq-len = 56572 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOD01000008.1 Clostridioides difficile FD037 DNA, sequence08, whole genome shotgun sequence

⇒Summary: seq-len = 157572 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6620-6847 bp Zoom in on locus 1 x4 CRISPR array Location: 6620-6847 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6620-6847 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6620-6847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOD01000004.1 Clostridioides difficile FD037 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 292432 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 92616-93036 bp Zoom in on locus 1 x7 CRISPR array Location: 92616-93036 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 92616-93036 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 92616-93036 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)