CRISPRone

CRISPRone report for GCA_004314385.1_ASM431438v1

♦ Seq 1: BIOE01000050.1 Clostridioides difficile FD038 DNA, sequence50, whole genome shotgun sequence

⇒Summary: seq-len = 7043 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-424 bp Zoom in on locus 1 x7 CRISPR array Location: 0-424 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 0-424 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-424 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOE01000018.1 Clostridioides difficile FD038 DNA, sequence18, whole genome shotgun sequence

⇒Summary: seq-len = 93237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1910-2288 bp Zoom in on locus 1 x6 CRISPR array Location: 1910-2288 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1910-2288 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1910-2288 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOE01000014.1 Clostridioides difficile FD038 DNA, sequence14, whole genome shotgun sequence

⇒Summary: seq-len = 136075 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57941-65224 bp Zoom in on locus 1 x17 Gene: cd09693:cas5 Type: Type-I Location: 57941-58588 bp Gene: pfam01881:cas6 Type: other Location: 58579-59343 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 59345-60493 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 60514-61584 bp Gene: COG1203:cas3 Type: Type-I Location: 61595-63577 bp CRISPR array Location: 64144-65224 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 64144-65224 bp Num of repeats: 17 Spacers: s1-s16 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64144-65224 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOE01000058.1 Clostridioides difficile FD038 DNA, sequence58, whole genome shotgun sequence

⇒Summary: seq-len = 3877 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-150 bp Zoom in on locus 1 x3 CRISPR array Location: 0-150 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 0-150 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOE01000008.1 Clostridioides difficile FD038 DNA, sequence08, whole genome shotgun sequence

⇒Summary: seq-len = 178979 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51746-59611 bp 2 Locus 2: 132881-133239 bp Zoom in on locus 1 Zoom in on locus 2 x6 Gene: cd09641:cas3HD Type: Type-I Location: 51746-54154 bp Gene: cd09693:cas5 Type: Type-I Location: 54181-54978 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54994-56007 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56027-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58502-59611 bp CRISPR array Location: 132881-133239 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 132881-133239 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132881-133239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOE01000023.1 Clostridioides difficile FD038 DNA, sequence23, whole genome shotgun sequence

⇒Summary: seq-len = 62970 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17934-19672 bp Zoom in on locus 1 x27 CRISPR array Location: 17934-19672 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 17934-19672 bp Num of repeats: 27 Spacers: s1-s26 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17934-19672 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOE01000012.1 Clostridioides difficile FD038 DNA, sequence12, whole genome shotgun sequence

⇒Summary: seq-len = 148128 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 105989-106214 bp Zoom in on locus 1 x4 CRISPR array Location: 105989-106214 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 105989-106214 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 105989-106214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOE01000002.1 Clostridioides difficile FD038 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 297178 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-424 bp 2 Locus 2: 296756-297180 bp Zoom in on locus 1 x7 Zoom in on locus 2 x7 CRISPR array Location: 1-424 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 1-424 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 296756-297180 bp Num of repeats: 7 Spacers: s7-s12 CRISPR array Location: 296756-297180 bp Num of repeats: 7 Spacers: s7-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1-424 bp]: array | spacers
           [Locus range 296756-297180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIOE01000004.1 Clostridioides difficile FD038 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 204772 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 470-1090 bp Zoom in on locus 1 x10 CRISPR array Location: 470-1090 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 470-1090 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 470-1090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIOE01000009.1 Clostridioides difficile FD038 DNA, sequence09, whole genome shotgun sequence

⇒Summary: seq-len = 177741 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 85812-87460 bp Zoom in on locus 1 x14 x3 CRISPR array Location: 85812-86697 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 85812-86697 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 87300-87460 bp Num of repeats: 3 Spacers: s14-s15 CRISPR array Location: 87300-87460 bp Num of repeats: 3 Spacers: s14-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 85812-86697 bp]: array | spacers
           [Locus range 87300-87460 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIOE01000060.1 Clostridioides difficile FD038 DNA, sequence60, whole genome shotgun sequence

⇒Summary: seq-len = 3401 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2914-3403 bp Zoom in on locus 1 x8 CRISPR array Location: 2914-3403 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2914-3403 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2914-3403 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIOE01000001.1 Clostridioides difficile FD038 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 325661 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 62686-73868 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 62686-63573 bp Gene: pfam01881:cas6 Type: other Location: 63651-64388 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 64394-66244 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 66246-67160 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 67162-67863 bp Gene: COG1203:cas3 Type: Type-I Location: 67874-70195 bp Gene: pfam01930:cas4 Type: Type-I Location: 70210-70761 bp Gene: cd09722:cas1 Type: universal Location: 70764-71744 bp Gene: cd09725:cas2 Type: universal Location: 71747-72013 bp CRISPR array Location: 72197-73868 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 72197-73868 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 72197-73868 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)