CRISPRone

CRISPRone report for GCA_004314405.1_ASM431440v1

♦ Seq 1: BIOF01000002.1 Clostridioides difficile FD040 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 362430 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 251487-252237 bp Zoom in on locus 1 x12 CRISPR array Location: 251487-252237 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 251487-252237 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 251487-252237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOF01000037.1 Clostridioides difficile FD040 DNA, sequence37, whole genome shotgun sequence

⇒Summary: seq-len = 12736 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7369-7661 bp Zoom in on locus 1 x5 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 7369-7661 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7369-7661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOF01000014.1 Clostridioides difficile FD040 DNA, sequence14, whole genome shotgun sequence

⇒Summary: seq-len = 123633 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19552-19973 bp Zoom in on locus 1 x7 CRISPR array Location: 19552-19973 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 19552-19973 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19552-19973 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOF01000009.1 Clostridioides difficile FD040 DNA, sequence09, whole genome shotgun sequence

⇒Summary: seq-len = 147563 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 135371-147427 bp Zoom in on locus 1 x46 Gene: cd09725:cas2 Type: universal Location: 135371-135661 bp Gene: cd09722:cas1 Type: universal Location: 135872-136879 bp Gene: pfam01930:cas4 Type: Type-I Location: 136905-137399 bp CRISPR array Location: 137484-140485 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 137484-140485 bp Num of repeats: 46 Spacers: s1-s45 Gene: cd09641:cas3HD Type: Type-I Location: 140675-143233 bp Gene: cd09693:cas5 Type: Type-I Location: 143257-143997 bp Gene: pfam05107:cas7b Type: Type-I Location: 143999-144988 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 144981-146720 bp Gene: cd09652:cas6 Type: other Location: 146732-147427 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 137484-140485 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOF01000003.1 Clostridioides difficile FD040 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 335493 bp; # of CRISPR array = 2; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51746-59611 bp 2 Locus 2: 132859-133357 bp Zoom in on locus 1 Zoom in on locus 2 x2 x5 Gene: cd09641:cas3HD Type: Type-I Location: 51746-54154 bp Gene: cd09693:cas5 Type: Type-I Location: 54181-54978 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54994-56007 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56027-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58502-59611 bp CRISPR array Location: 132859-132953 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 132859-132953 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 133064-133357 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 133064-133357 bp Num of repeats: 5 Spacers: s2-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 132859-132953 bp]: array | spacers
           [Locus range 133064-133357 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOF01000012.1 Clostridioides difficile FD040 DNA, sequence12, whole genome shotgun sequence

⇒Summary: seq-len = 126292 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19634-19796 bp Zoom in on locus 1 x3 CRISPR array Location: 19634-19796 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19634-19796 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19634-19796 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOF01000020.1 Clostridioides difficile FD040 DNA, sequence20, whole genome shotgun sequence

⇒Summary: seq-len = 51900 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45055-45281 bp Zoom in on locus 1 x4 CRISPR array Location: 45055-45281 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 45055-45281 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45055-45281 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOF01000019.1 Clostridioides difficile FD040 DNA, sequence19, whole genome shotgun sequence

⇒Summary: seq-len = 66714 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)