CRISPRone

CRISPRone report for GCA_004314425.1_ASM431442v1

♦ Seq 1: BIOG01000024.1 Clostridioides difficile FD041 DNA, sequence24, whole genome shotgun sequence

⇒Summary: seq-len = 57704 bp; # of CRISPR array = 1; # of cas gene = 4  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-6364 bp Zoom in on locus 1 x46 Gene: cd09639:cas3 Type: Type-I Location: 2-1060 bp CRISPR array Location: 1250-4252 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 1250-4252 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 4336-4830 bp Gene: cd09722:cas1 Type: universal Location: 4856-5863 bp Gene: cd09725:cas2 Type: universal Location: 6074-6364 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1250-4252 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOG01000029.1 Clostridioides difficile FD041 DNA, sequence29, whole genome shotgun sequence

⇒Summary: seq-len = 39723 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1088-1448 bp Zoom in on locus 1 x6 CRISPR array Location: 1088-1448 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1088-1448 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1088-1448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOG01000014.1 Clostridioides difficile FD041 DNA, sequence14, whole genome shotgun sequence

⇒Summary: seq-len = 110522 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33789-41654 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33789-36197 bp Gene: cd09693:cas5 Type: Type-I Location: 36224-37021 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37037-38050 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38070-39545 bp Gene: pfam01881:cas6 Type: other Location: 39550-40287 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 40545-41654 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOG01000020.1 Clostridioides difficile FD041 DNA, sequence20, whole genome shotgun sequence

⇒Summary: seq-len = 81485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7914-8076 bp Zoom in on locus 1 x3 CRISPR array Location: 7914-8076 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7914-8076 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7914-8076 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOG01000002.1 Clostridioides difficile FD041 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 230694 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 145294-145715 bp Zoom in on locus 1 x7 CRISPR array Location: 145294-145715 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 145294-145715 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 145294-145715 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOG01000003.1 Clostridioides difficile FD041 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 224397 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 147461-147687 bp Zoom in on locus 1 x4 CRISPR array Location: 147461-147687 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 147461-147687 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 147461-147687 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOG01000001.1 Clostridioides difficile FD041 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 257327 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-5200 bp 2 Locus 2: 194643-195131 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 2-1006 bp Gene: cd09693:cas5 Type: Type-I Location: 1030-1770 bp Gene: pfam05107:cas7b Type: Type-I Location: 1772-2761 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 2754-4493 bp Gene: cd09652:cas6 Type: other Location: 4505-5200 bp CRISPR array Location: 194643-195131 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 194643-195131 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 194643-195131 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOG01000057.1 Clostridioides difficile FD041 DNA, sequence57, whole genome shotgun sequence

⇒Summary: seq-len = 14134 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8767-9059 bp Zoom in on locus 1 x5 CRISPR array Location: 8767-9059 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 8767-9059 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8767-9059 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIOG01000009.1 Clostridioides difficile FD041 DNA, sequence09, whole genome shotgun sequence

⇒Summary: seq-len = 130290 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4097-4654 bp Zoom in on locus 1 x9 CRISPR array Location: 4097-4654 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4097-4654 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4097-4654 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)