CRISPRone

CRISPRone report for GCA_004314465.1_ASM431446v1

♦ Seq 1: BIOI01000001.1 Clostridioides difficile FD043 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 318751 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 252867-263811 bp Zoom in on locus 1 x22 CRISPR array Location: 252867-254273 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 252867-254273 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09725:cas2 Type: universal Location: 254457-254723 bp Gene: cd09722:cas1 Type: universal Location: 254726-255706 bp Gene: pfam01930:cas4 Type: Type-I Location: 255709-256227 bp Gene: COG1203:cas3 Type: Type-I Location: 256275-258596 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 258607-259308 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 259310-260224 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 260226-262076 bp Gene: pfam01881:cas6 Type: other Location: 262082-262876 bp Gene: pfam13280:WYL Type: other Location: 262897-263811 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 252867-254273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOI01000058.1 Clostridioides difficile FD043 DNA, sequence058, whole genome shotgun sequence

⇒Summary: seq-len = 18078 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3929-4286 bp Zoom in on locus 1 x6 CRISPR array Location: 3929-4286 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3929-4286 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3929-4286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOI01000002.1 Clostridioides difficile FD043 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 216264 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91502-92060 bp Zoom in on locus 1 x9 CRISPR array Location: 91502-92060 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 91502-92060 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91502-92060 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOI01000047.1 Clostridioides difficile FD043 DNA, sequence047, whole genome shotgun sequence

⇒Summary: seq-len = 24922 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19634-19795 bp Zoom in on locus 1 x3 CRISPR array Location: 19634-19795 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19634-19795 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19634-19795 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOI01000066.1 Clostridioides difficile FD043 DNA, sequence066, whole genome shotgun sequence

⇒Summary: seq-len = 13098 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7345-8493 bp Zoom in on locus 1 x18 CRISPR array Location: 7345-8493 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 7345-8493 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7345-8493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOI01000073.1 Clostridioides difficile FD043 DNA, sequence073, whole genome shotgun sequence

⇒Summary: seq-len = 7174 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3455-3681 bp Zoom in on locus 1 x4 CRISPR array Location: 3455-3681 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3455-3681 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3455-3681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOI01000071.1 Clostridioides difficile FD043 DNA, sequence071, whole genome shotgun sequence

⇒Summary: seq-len = 8359 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4870-5486 bp Zoom in on locus 1 x10 CRISPR array Location: 4870-5486 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 4870-5486 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4870-5486 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOI01000003.1 Clostridioides difficile FD043 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 205672 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166938-167031 bp Zoom in on locus 1 x2 CRISPR array Location: 166938-167031 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 166938-167031 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 166938-167031 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIOI01000014.1 Clostridioides difficile FD043 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 87330 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51747-60068 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51747-54155 bp Gene: cd09693:cas5 Type: Type-I Location: 54182-54979 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 54995-56011 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56031-57506 bp Gene: pfam01881:cas6 Type: other Location: 57511-58248 bp Gene: unk Type: unknown Location: 58349-58525 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58959-60068 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIOI01000027.1 Clostridioides difficile FD043 DNA, sequence027, whole genome shotgun sequence

⇒Summary: seq-len = 52528 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6652-7409 bp Zoom in on locus 1 x12 CRISPR array Location: 6652-7409 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 6652-7409 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6652-7409 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIOI01000004.1 Clostridioides difficile FD043 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 154986 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 505-5063 bp Zoom in on locus 1 x5 x4 x8 CRISPR array Location: 505-797 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 505-797 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 2480-2706 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 2480-2706 bp Num of repeats: 4 Spacers: s5-s7 CRISPR array Location: 4568-5063 bp Num of repeats: 8 Spacers: s8-s14 CRISPR array Location: 4568-5063 bp Num of repeats: 8 Spacers: s8-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 505-797 bp]: array | spacers
           [Locus range 2480-2706 bp]: array | spacers
           [Locus range 4568-5063 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)