CRISPRone

CRISPRone report for GCA_004314525.1_ASM431452v1

♦ Seq 1: BIOL01000022.1 Clostridioides difficile FD046 DNA, sequence22, whole genome shotgun sequence

⇒Summary: seq-len = 59830 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18701-18863 bp Zoom in on locus 1 x3 CRISPR array Location: 18701-18863 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 18701-18863 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18701-18863 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOL01000030.1 Clostridioides difficile FD046 DNA, sequence30, whole genome shotgun sequence

⇒Summary: seq-len = 44868 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 40958-41708 bp Zoom in on locus 1 x12 CRISPR array Location: 40958-41708 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 40958-41708 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 40958-41708 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOL01000053.1 Clostridioides difficile FD046 DNA, sequence53, whole genome shotgun sequence

⇒Summary: seq-len = 14134 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5084-5377 bp Zoom in on locus 1 x5 CRISPR array Location: 5084-5377 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5084-5377 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5084-5377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOL01000002.1 Clostridioides difficile FD046 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 200626 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67166-67724 bp 2 Locus 2: 140971-148836 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 67166-67724 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 67166-67724 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 140971-142080 bp Gene: pfam01881:cas6 Type: other Location: 142338-143075 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 143080-144555 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 144575-145588 bp Gene: cd09693:cas5 Type: Type-I Location: 145604-146401 bp Gene: cd09641:cas3HD Type: Type-I Location: 146428-148836 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 67166-67724 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOL01000027.1 Clostridioides difficile FD046 DNA, sequence27, whole genome shotgun sequence

⇒Summary: seq-len = 51899 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6620-6847 bp Zoom in on locus 1 x4 CRISPR array Location: 6620-6847 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 6620-6847 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6620-6847 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOL01000003.1 Clostridioides difficile FD046 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 186497 bp; # of CRISPR array = 1; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 121577-133633 bp Zoom in on locus 1 x46 Gene: cd09652:cas6 Type: other Location: 121577-122272 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 122284-124023 bp Gene: pfam05107:cas7b Type: Type-I Location: 124016-125005 bp Gene: cd09693:cas5 Type: Type-I Location: 125007-125747 bp Gene: cd09641:cas3HD Type: Type-I Location: 125771-128329 bp CRISPR array Location: 128519-131521 bp Num of repeats: 46 Spacers: s1-s45 CRISPR array Location: 128519-131521 bp Num of repeats: 46 Spacers: s1-s45 Gene: pfam01930:cas4 Type: Type-I Location: 131605-132099 bp Gene: cd09722:cas1 Type: universal Location: 132125-133132 bp Gene: cd09725:cas2 Type: universal Location: 133343-133633 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 128519-131521 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOL01000001.1 Clostridioides difficile FD046 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 238254 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 178384-178805 bp Zoom in on locus 1 x7 CRISPR array Location: 178384-178805 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 178384-178805 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 178384-178805 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOL01000041.1 Clostridioides difficile FD046 DNA, sequence41, whole genome shotgun sequence

⇒Summary: seq-len = 23671 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5375-5736 bp Zoom in on locus 1 x6 CRISPR array Location: 5375-5736 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 5375-5736 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5375-5736 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)