CRISPRone

CRISPRone report for GCA_004314565.1_ASM431456v1

♦ Seq 1: BION01000011.1 Clostridioides difficile FD048 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 73893 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12480-22212 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 12480-13589 bp Gene: cas14:cas14 Type: Type-V Location: 13742-14914 bp Gene: unk Type: unknown Location: 14942-15400 bp Gene: pfam01881:cas6 Type: other Location: 15714-16451 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 16456-17931 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 17951-18964 bp Gene: cd09693:cas5 Type: Type-I Location: 18980-19777 bp Gene: cd09641:cas3HD Type: Type-I Location: 19804-22212 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BION01000002.1 Clostridioides difficile FD048 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 142222 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91161-91583 bp Zoom in on locus 1 x7 CRISPR array Location: 91161-91583 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 91161-91583 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91161-91583 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BION01000097.1 Clostridioides difficile FD048 DNA, sequence097, whole genome shotgun sequence

⇒Summary: seq-len = 9291 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8681-8908 bp Zoom in on locus 1 x4 CRISPR array Location: 8681-8908 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8681-8908 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8681-8908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BION01000012.1 Clostridioides difficile FD048 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 68974 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32579-43793 bp Zoom in on locus 1 x26 CRISPR array Location: 32579-34255 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 32579-34255 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 34439-34705 bp Gene: cd09722:cas1 Type: universal Location: 34708-35688 bp Gene: pfam01930:cas4 Type: Type-I Location: 35691-36209 bp Gene: cd09641:cas3HD Type: Type-I Location: 36257-38578 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 38589-39290 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 39292-40206 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 40208-41494 bp Gene: unk Type: unknown Location: 41552-42058 bp Gene: pfam01881:cas6 Type: other Location: 42064-42858 bp Gene: pfam13280:WYL Type: other Location: 42879-43793 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32579-34255 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BION01000023.1 Clostridioides difficile FD048 DNA, sequence023, whole genome shotgun sequence

⇒Summary: seq-len = 54189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34955-35245 bp Zoom in on locus 1 x5 CRISPR array Location: 34955-35245 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 34955-35245 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34955-35245 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BION01000099.1 Clostridioides difficile FD048 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 8753 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1901-7704 bp Zoom in on locus 1 x6 x5 x2 CRISPR array Location: 1901-2262 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1901-2262 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4905-5198 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 4905-5198 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 7609-7704 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 7609-7704 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1901-2262 bp]: array | spacers
           [Locus range 4905-5198 bp]: array | spacers
           [Locus range 7609-7704 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BION01000056.1 Clostridioides difficile FD048 DNA, sequence056, whole genome shotgun sequence

⇒Summary: seq-len = 25414 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21061-21621 bp Zoom in on locus 1 x9 CRISPR array Location: 21061-21621 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 21061-21621 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21061-21621 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BION01000094.1 Clostridioides difficile FD048 DNA, sequence094, whole genome shotgun sequence

⇒Summary: seq-len = 10201 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7899-8127 bp Zoom in on locus 1 x4 CRISPR array Location: 7899-8127 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 7899-8127 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7899-8127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BION01000059.1 Clostridioides difficile FD048 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 24725 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17934-19350 bp Zoom in on locus 1 x22 CRISPR array Location: 17934-19350 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 17934-19350 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17934-19350 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BION01000015.1 Clostridioides difficile FD048 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 65321 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45550-46103 bp Zoom in on locus 1 x9 CRISPR array Location: 45550-46103 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 45550-46103 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45550-46103 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BION01000037.1 Clostridioides difficile FD048 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 39206 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35810-36293 bp Zoom in on locus 1 x8 CRISPR array Location: 35810-36293 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 35810-36293 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35810-36293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)