CRISPRone

CRISPRone report for GCA_004314685.1_ASM431468v1

♦ Seq 1: BIOT01000024.1 Clostridioides difficile FD054 DNA, sequence024, whole genome shotgun sequence

⇒Summary: seq-len = 57357 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17432-28390 bp Zoom in on locus 1 Gene: COG0640:csa3 Type: Subtype-I-A Location: 17432-17917 bp Gene: cd06127:DEDDh Type: Type-I Location: 24720-25766 bp Gene: unk Type: unknown Location: 26138-26644 bp Gene: unk Type: unknown Location: 27057-27725 bp Gene: cd06127:DEDDh Type: Type-I Location: 27884-28390 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOT01000007.1 Clostridioides difficile FD054 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 105846 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18055-27778 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 18055-20463 bp Gene: cd09693:cas5 Type: Type-I Location: 20490-21287 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 21303-22316 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 22336-23802 bp Gene: pfam01881:cas6 Type: other Location: 23807-24544 bp Gene: unk Type: unknown Location: 24858-25316 bp Gene: cas14:cas14 Type: Type-V Location: 25344-26516 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 26669-27778 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOT01000027.1 Clostridioides difficile FD054 DNA, sequence027, whole genome shotgun sequence

⇒Summary: seq-len = 52492 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8846-9269 bp Zoom in on locus 1 x7 CRISPR array Location: 8846-9269 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 8846-9269 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8846-9269 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOT01000079.1 Clostridioides difficile FD054 DNA, sequence079, whole genome shotgun sequence

⇒Summary: seq-len = 12347 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1714-2070 bp Zoom in on locus 1 x6 CRISPR array Location: 1714-2070 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1714-2070 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1714-2070 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOT01000004.1 Clostridioides difficile FD054 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 131100 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 112380-112999 bp Zoom in on locus 1 x10 CRISPR array Location: 112380-112999 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 112380-112999 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 112380-112999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOT01000053.1 Clostridioides difficile FD054 DNA, sequence053, whole genome shotgun sequence

⇒Summary: seq-len = 26936 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6224-6384 bp Zoom in on locus 1 x3 CRISPR array Location: 6224-6384 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 6224-6384 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6224-6384 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOT01000020.1 Clostridioides difficile FD054 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 65100 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 59366-59726 bp Zoom in on locus 1 x6 CRISPR array Location: 59366-59726 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 59366-59726 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 59366-59726 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)