CRISPRone

CRISPRone report for GCA_004314705.1_ASM431470v1

♦ Seq 1: BIOU01000035.1 Clostridioides difficile FD055 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 34244 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28003-28231 bp Zoom in on locus 1 x4 CRISPR array Location: 28003-28231 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 28003-28231 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28003-28231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOU01000008.1 Clostridioides difficile FD055 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 128945 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7372-8520 bp Zoom in on locus 1 x18 CRISPR array Location: 7372-8520 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 7372-8520 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7372-8520 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOU01000021.1 Clostridioides difficile FD055 DNA, sequence021, whole genome shotgun sequence

⇒Summary: seq-len = 56933 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38686-39176 bp Zoom in on locus 1 x8 CRISPR array Location: 38686-39176 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 38686-39176 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38686-39176 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOU01000038.1 Clostridioides difficile FD055 DNA, sequence038, whole genome shotgun sequence

⇒Summary: seq-len = 32611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3390-4540 bp Zoom in on locus 1 x18 CRISPR array Location: 3390-4540 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3390-4540 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3390-4540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOU01000007.1 Clostridioides difficile FD055 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 130464 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64185-75322 bp Zoom in on locus 1 x25 CRISPR array Location: 64185-65784 bp Num of repeats: 25 Spacers: s1-s24 CRISPR array Location: 64185-65784 bp Num of repeats: 25 Spacers: s1-s24 Gene: cd09725:cas2 Type: universal Location: 65968-66234 bp Gene: cd09722:cas1 Type: universal Location: 66237-67217 bp Gene: pfam01930:cas4 Type: Type-I Location: 67220-67738 bp Gene: COG1203:cas3 Type: Type-I Location: 67786-70107 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 70118-70819 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 70821-71735 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 71737-73587 bp Gene: pfam01881:cas6 Type: other Location: 73593-74387 bp Gene: pfam13280:WYL Type: other Location: 74408-75322 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64185-65784 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOU01000015.1 Clostridioides difficile FD055 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 79610 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67862-72792 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 67862-68747 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 67862-68747 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 70541-70764 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 70541-70764 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 72369-72792 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 72369-72792 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67862-68747 bp]: array | spacers
           [Locus range 70541-70764 bp]: array | spacers
           [Locus range 72369-72792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOU01000002.1 Clostridioides difficile FD055 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 225916 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44049-44407 bp 2 Locus 2: 117673-126005 bp Zoom in on locus 1 x6 Zoom in on locus 2 CRISPR array Location: 44049-44407 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 44049-44407 bp Num of repeats: 6 Spacers: s1-s5 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 117673-118782 bp Gene: unk Type: unknown Location: 119216-119392 bp Gene: pfam01881:cas6 Type: other Location: 119504-120241 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 120246-121721 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 121741-122757 bp Gene: cd09693:cas5 Type: Type-I Location: 122773-123570 bp Gene: cd09641:cas3HD Type: Type-I Location: 123597-126005 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 44049-44407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOU01000016.1 Clostridioides difficile FD055 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 73304 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1977-2137 bp Zoom in on locus 1 x3 CRISPR array Location: 1977-2137 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1977-2137 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1977-2137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIOU01000003.1 Clostridioides difficile FD055 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 186919 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19978-20072 bp Zoom in on locus 1 x2 CRISPR array Location: 19978-20072 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 19978-20072 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19978-20072 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIOU01000020.1 Clostridioides difficile FD055 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 61882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1911-2404 bp Zoom in on locus 1 x8 CRISPR array Location: 1911-2404 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1911-2404 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1911-2404 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIOU01000082.1 Clostridioides difficile FD055 DNA, sequence082, whole genome shotgun sequence

⇒Summary: seq-len = 8358 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2874-3491 bp Zoom in on locus 1 x10 CRISPR array Location: 2874-3491 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2874-3491 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2874-3491 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)