CRISPRone

CRISPRone report for GCA_004314725.1_ASM431472v1

♦ Seq 1: BIOV01000076.1 Clostridioides difficile FD056 DNA, sequence76, whole genome shotgun sequence

⇒Summary: seq-len = 5268 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4719-5137 bp Zoom in on locus 1 x7 CRISPR array Location: 4719-5137 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 4719-5137 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4719-5137 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOV01000011.1 Clostridioides difficile FD056 DNA, sequence11, whole genome shotgun sequence

⇒Summary: seq-len = 104863 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5883-6703 bp Zoom in on locus 1 x13 CRISPR array Location: 5883-6703 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 5883-6703 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5883-6703 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOV01000025.1 Clostridioides difficile FD056 DNA, sequence25, whole genome shotgun sequence

⇒Summary: seq-len = 62491 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43329-44667 bp Zoom in on locus 1 x21 CRISPR array Location: 43329-44667 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 43329-44667 bp Num of repeats: 21 Spacers: s1-s20 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43329-44667 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOV01000018.1 Clostridioides difficile FD056 DNA, sequence18, whole genome shotgun sequence

⇒Summary: seq-len = 81914 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63252-63875 bp Zoom in on locus 1 x10 CRISPR array Location: 63252-63875 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 63252-63875 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63252-63875 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOV01000002.1 Clostridioides difficile FD056 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 149029 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51792-60101 bp 2 Locus 2: 133381-133474 bp Zoom in on locus 1 Zoom in on locus 2 x2 Gene: cd09641:cas3HD Type: Type-I Location: 51792-54200 bp Gene: cd09693:cas5 Type: Type-I Location: 54227-55024 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55040-56053 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56073-57539 bp Gene: pfam01881:cas6 Type: other Location: 57544-58281 bp Gene: unk Type: unknown Location: 58382-58558 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 58992-60101 bp CRISPR array Location: 133381-133474 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 133381-133474 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 133381-133474 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOV01000050.1 Clostridioides difficile FD056 DNA, sequence50, whole genome shotgun sequence

⇒Summary: seq-len = 24540 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18704-18998 bp Zoom in on locus 1 x5 CRISPR array Location: 18704-18998 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 18704-18998 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18704-18998 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOV01000026.1 Clostridioides difficile FD056 DNA, sequence26, whole genome shotgun sequence

⇒Summary: seq-len = 61987 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3733-4883 bp Zoom in on locus 1 x18 CRISPR array Location: 3733-4883 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 3733-4883 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3733-4883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOV01000016.1 Clostridioides difficile FD056 DNA, sequence16, whole genome shotgun sequence

⇒Summary: seq-len = 88105 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 61562-71760 bp Zoom in on locus 1 x11 Gene: pfam13280:WYL Type: other Location: 61562-62449 bp Gene: pfam01881:cas6 Type: other Location: 62527-63264 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 63270-65120 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 65122-66036 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 66038-66739 bp Gene: COG1203:cas3 Type: Type-I Location: 66750-69071 bp Gene: pfam01930:cas4 Type: Type-I Location: 69086-69637 bp Gene: cd09722:cas1 Type: universal Location: 69640-70620 bp Gene: cd09725:cas2 Type: universal Location: 70623-70889 bp CRISPR array Location: 71073-71760 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 71073-71760 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 71073-71760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIOV01000038.1 Clostridioides difficile FD056 DNA, sequence38, whole genome shotgun sequence

⇒Summary: seq-len = 43150 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39085-39905 bp Zoom in on locus 1 x13 CRISPR array Location: 39085-39905 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 39085-39905 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39085-39905 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)