CRISPRone

CRISPRone report for GCA_004314745.1_ASM431474v1

♦ Seq 1: BIOW01000013.1 Clostridioides difficile FD057 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 78192 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1050-12099 bp Zoom in on locus 1 x23 CRISPR array Location: 1050-2522 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 1050-2522 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 2706-2972 bp Gene: cd09722:cas1 Type: universal Location: 2975-3955 bp Gene: pfam01930:cas4 Type: Type-I Location: 3958-4476 bp Gene: COG1203:cas3 Type: Type-I Location: 4524-6845 bp Gene: cd09693:cas5 Type: Type-I Location: 6856-7557 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 7559-8473 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 8475-10325 bp Gene: pfam01881:cas6 Type: other Location: 10331-11125 bp Gene: pfam13280:WYL Type: other Location: 11146-12099 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1050-2522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOW01000067.1 Clostridioides difficile FD057 DNA, sequence067, whole genome shotgun sequence

⇒Summary: seq-len = 18724 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6593-7282 bp Zoom in on locus 1 x11 CRISPR array Location: 6593-7282 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 6593-7282 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6593-7282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOW01000009.1 Clostridioides difficile FD057 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 99781 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 84213-84772 bp Zoom in on locus 1 x9 CRISPR array Location: 84213-84772 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 84213-84772 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 84213-84772 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOW01000052.1 Clostridioides difficile FD057 DNA, sequence052, whole genome shotgun sequence

⇒Summary: seq-len = 29960 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1938-9805 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1938-4346 bp Gene: cd09693:cas5 Type: Type-I Location: 4373-5170 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 5186-6202 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 6221-7696 bp Gene: pfam01881:cas6 Type: other Location: 7701-8438 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 8696-9805 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOW01000059.1 Clostridioides difficile FD057 DNA, sequence059, whole genome shotgun sequence

⇒Summary: seq-len = 22735 bp; # of CRISPR array = 1; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1835-9244 bp Zoom in on locus 1 x4 CRISPR array Location: 1835-2059 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 1835-2059 bp Num of repeats: 4 Spacers: s1-s3 Gene: COG0640:csa3 Type: Subtype-I-A Location: 5513-5812 bp Gene: unk Type: unknown Location: 6431-6565 bp Gene: unk Type: unknown Location: 6776-7528 bp Gene: cd09718:cas1 Type: universal Location: 7589-9244 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1835-2059 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOW01000019.1 Clostridioides difficile FD057 DNA, sequence019, whole genome shotgun sequence

⇒Summary: seq-len = 63691 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60747-60908 bp Zoom in on locus 1 x3 CRISPR array Location: 60747-60908 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 60747-60908 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60747-60908 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIOW01000116.1 Clostridioides difficile FD057 DNA, sequence116, whole genome shotgun sequence

⇒Summary: seq-len = 2882 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2049-2539 bp Zoom in on locus 1 x8 CRISPR array Location: 2049-2539 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 2049-2539 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2049-2539 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIOW01000029.1 Clostridioides difficile FD057 DNA, sequence029, whole genome shotgun sequence

⇒Summary: seq-len = 47855 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46337-46628 bp Zoom in on locus 1 x5 CRISPR array Location: 46337-46628 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 46337-46628 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 46337-46628 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIOW01000001.1 Clostridioides difficile FD057 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 211069 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 195251-195874 bp Zoom in on locus 1 x10 CRISPR array Location: 195251-195874 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 195251-195874 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 195251-195874 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIOW01000077.1 Clostridioides difficile FD057 DNA, sequence077, whole genome shotgun sequence

⇒Summary: seq-len = 12303 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8730-9155 bp Zoom in on locus 1 x7 CRISPR array Location: 8730-9155 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 8730-9155 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8730-9155 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIOW01000005.1 Clostridioides difficile FD057 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 116838 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1591-2175 bp Zoom in on locus 1 x3 x6 CRISPR array Location: 1591-1751 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1591-1751 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1813-2175 bp Num of repeats: 6 Spacers: s3-s7 CRISPR array Location: 1813-2175 bp Num of repeats: 6 Spacers: s3-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1591-1751 bp]: array | spacers
           [Locus range 1813-2175 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)