CRISPRone

CRISPRone report for GCA_004314805.1_ASM431480v1

♦ Seq 1: BIOZ01000014.1 Clostridioides difficile FD060 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 83632 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51755-61478 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51755-54163 bp Gene: cd09693:cas5 Type: Type-I Location: 54190-54987 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55003-56016 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56036-57502 bp Gene: pfam01881:cas6 Type: other Location: 57507-58244 bp Gene: unk Type: unknown Location: 58558-59016 bp Gene: cas14:cas14 Type: Type-V Location: 59044-60216 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60369-61478 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIOZ01000033.1 Clostridioides difficile FD060 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 54492 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33321-36376 bp Zoom in on locus 1 x4 x3 CRISPR array Location: 33321-33548 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 33321-33548 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 36215-36376 bp Num of repeats: 3 Spacers: s4-s5 CRISPR array Location: 36215-36376 bp Num of repeats: 3 Spacers: s4-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33321-33548 bp]: array | spacers
           [Locus range 36215-36376 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIOZ01000013.1 Clostridioides difficile FD060 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 88615 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63670-64290 bp Zoom in on locus 1 x10 CRISPR array Location: 63670-64290 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 63670-64290 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63670-64290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIOZ01000035.1 Clostridioides difficile FD060 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 53501 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7742-7903 bp Zoom in on locus 1 x3 CRISPR array Location: 7742-7903 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7742-7903 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7742-7903 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIOZ01000016.1 Clostridioides difficile FD060 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 77548 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 47347-47442 bp Zoom in on locus 1 x2 CRISPR array Location: 47347-47442 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 47347-47442 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 47347-47442 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIOZ01000003.1 Clostridioides difficile FD060 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 126134 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28022-28247 bp Zoom in on locus 1 x4 CRISPR array Location: 28022-28247 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 28022-28247 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28022-28247 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)