CRISPRone

CRISPRone report for GCA_004314865.1_ASM431486v1

♦ Seq 1: BIPC01000018.1 Clostridioides difficile FD063 DNA, sequence018, whole genome shotgun sequence

⇒Summary: seq-len = 73812 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28717-28878 bp Zoom in on locus 1 x3 CRISPR array Location: 28717-28878 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 28717-28878 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28717-28878 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPC01000032.1 Clostridioides difficile FD063 DNA, sequence032, whole genome shotgun sequence

⇒Summary: seq-len = 45501 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 45142-45503 bp Zoom in on locus 1 x6 CRISPR array Location: 45142-45503 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 45142-45503 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 45142-45503 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPC01000053.1 Clostridioides difficile FD063 DNA, sequence053, whole genome shotgun sequence

⇒Summary: seq-len = 26728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18147-18636 bp Zoom in on locus 1 x8 CRISPR array Location: 18147-18636 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 18147-18636 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18147-18636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPC01000080.1 Clostridioides difficile FD063 DNA, sequence080, whole genome shotgun sequence

⇒Summary: seq-len = 12139 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 470-565 bp Zoom in on locus 1 x2 CRISPR array Location: 470-565 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 470-565 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 470-565 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPC01000086.1 Clostridioides difficile FD063 DNA, sequence086, whole genome shotgun sequence

⇒Summary: seq-len = 9776 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3220-3840 bp Zoom in on locus 1 x10 CRISPR array Location: 3220-3840 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 3220-3840 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3220-3840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPC01000012.1 Clostridioides difficile FD063 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 95146 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27987-28343 bp Zoom in on locus 1 x6 CRISPR array Location: 27987-28343 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 27987-28343 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 27987-28343 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPC01000011.1 Clostridioides difficile FD063 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 95311 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33798-43521 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 33798-36206 bp Gene: cd09693:cas5 Type: Type-I Location: 36233-37030 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 37046-38059 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 38079-39545 bp Gene: pfam01881:cas6 Type: other Location: 39550-40287 bp Gene: unk Type: unknown Location: 40601-41059 bp Gene: cas14:cas14 Type: Type-V Location: 41087-42259 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 42412-43521 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)