CRISPRone

CRISPRone report for GCA_004314945.1_ASM431494v1

♦ Seq 1: BIPG01000026.1 Clostridioides difficile FD067 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 43226 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18193-18747 bp Zoom in on locus 1 x9 CRISPR array Location: 18193-18747 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18193-18747 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18193-18747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPG01000098.1 Clostridioides difficile FD067 DNA, sequence098, whole genome shotgun sequence

⇒Summary: seq-len = 13783 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7899-8127 bp Zoom in on locus 1 x4 CRISPR array Location: 7899-8127 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 7899-8127 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7899-8127 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPG01000029.1 Clostridioides difficile FD067 DNA, sequence029, whole genome shotgun sequence

⇒Summary: seq-len = 41234 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16121-27335 bp Zoom in on locus 1 x26 CRISPR array Location: 16121-17797 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 16121-17797 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 17981-18247 bp Gene: cd09722:cas1 Type: universal Location: 18250-19230 bp Gene: pfam01930:cas4 Type: Type-I Location: 19233-19751 bp Gene: cd09641:cas3HD Type: Type-I Location: 19799-22120 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 22131-22832 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22834-23748 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 23750-25036 bp Gene: unk Type: unknown Location: 25094-25600 bp Gene: pfam01881:cas6 Type: other Location: 25606-26400 bp Gene: pfam13280:WYL Type: other Location: 26421-27335 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16121-17797 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPG01000166.1 Clostridioides difficile FD067 DNA, sequence166, whole genome shotgun sequence

⇒Summary: seq-len = 2370 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 57-1277 bp Zoom in on locus 1 x19 CRISPR array Location: 57-1277 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 57-1277 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 57-1277 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPG01000097.1 Clostridioides difficile FD067 DNA, sequence097, whole genome shotgun sequence

⇒Summary: seq-len = 13865 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1696-2180 bp Zoom in on locus 1 x8 CRISPR array Location: 1696-2180 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 1696-2180 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1696-2180 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPG01000090.1 Clostridioides difficile FD067 DNA, sequence090, whole genome shotgun sequence

⇒Summary: seq-len = 15769 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10297-10719 bp Zoom in on locus 1 x7 CRISPR array Location: 10297-10719 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 10297-10719 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10297-10719 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPG01000162.1 Clostridioides difficile FD067 DNA, sequence162, whole genome shotgun sequence

⇒Summary: seq-len = 2675 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 67-360 bp Zoom in on locus 1 x5 CRISPR array Location: 67-360 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 67-360 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 67-360 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIPG01000003.1 Clostridioides difficile FD067 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 128469 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2731-3091 bp 2 Locus 2: 27002-27294 bp Zoom in on locus 1 x6 Zoom in on locus 2 x5 CRISPR array Location: 2731-3091 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2731-3091 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 27002-27294 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 27002-27294 bp Num of repeats: 5 Spacers: s6-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2731-3091 bp]: array | spacers
           [Locus range 27002-27294 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIPG01000042.1 Clostridioides difficile FD067 DNA, sequence042, whole genome shotgun sequence

⇒Summary: seq-len = 34495 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28334-34493 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28334-30742 bp Gene: cd09693:cas5 Type: Type-I Location: 30769-31566 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31582-32595 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32615-34090 bp Gene: pfam01881:cas6 Type: other Location: 34095-34493 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIPG01000142.1 Clostridioides difficile FD067 DNA, sequence142, whole genome shotgun sequence

⇒Summary: seq-len = 5613 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5376-5537 bp Zoom in on locus 1 x3 CRISPR array Location: 5376-5537 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5376-5537 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5376-5537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)