CRISPRone

CRISPRone report for GCA_004315025.1_ASM431502v1

♦ Seq 1: BIPK01000094.1 Clostridioides difficile FD072 DNA, sequence094, whole genome shotgun sequence

⇒Summary: seq-len = 4272 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-883 bp Zoom in on locus 1 x14 CRISPR array Location: 0-883 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 0-883 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-883 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPK01000002.1 Clostridioides difficile FD072 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 188021 bp; # of CRISPR array = 4; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73694-78624 bp 2 Locus 2: 169286-169776 bp Zoom in on locus 1 x14 x4 x7 Zoom in on locus 2 x8 CRISPR array Location: 73694-74579 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 73694-74579 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 76373-76596 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 76373-76596 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 78201-78624 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 78201-78624 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 169286-169776 bp Num of repeats: 8 Spacers: s23-s29 CRISPR array Location: 169286-169776 bp Num of repeats: 8 Spacers: s23-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 73694-74579 bp]: array | spacers
           [Locus range 76373-76596 bp]: array | spacers
           [Locus range 78201-78624 bp]: array | spacers
           [Locus range 169286-169776 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPK01000040.1 Clostridioides difficile FD072 DNA, sequence040, whole genome shotgun sequence

⇒Summary: seq-len = 34820 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34054-34670 bp Zoom in on locus 1 x10 CRISPR array Location: 34054-34670 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 34054-34670 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34054-34670 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPK01000052.1 Clostridioides difficile FD072 DNA, sequence052, whole genome shotgun sequence

⇒Summary: seq-len = 26137 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12741-12834 bp Zoom in on locus 1 x2 CRISPR array Location: 12741-12834 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 12741-12834 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12741-12834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPK01000028.1 Clostridioides difficile FD072 DNA, sequence028, whole genome shotgun sequence

⇒Summary: seq-len = 48738 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4353-4710 bp Zoom in on locus 1 x6 CRISPR array Location: 4353-4710 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4353-4710 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4353-4710 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPK01000012.1 Clostridioides difficile FD072 DNA, sequence012, whole genome shotgun sequence

⇒Summary: seq-len = 82335 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16212-27219 bp Zoom in on locus 1 x23 CRISPR array Location: 16212-17681 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 16212-17681 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 17865-18131 bp Gene: cd09722:cas1 Type: universal Location: 18134-19114 bp Gene: pfam01930:cas4 Type: Type-I Location: 19117-19635 bp Gene: COG1203:cas3 Type: Type-I Location: 19683-22004 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 22015-22716 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 22718-23632 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 23634-25484 bp Gene: pfam01881:cas6 Type: other Location: 25490-26284 bp Gene: pfam13280:WYL Type: other Location: 26305-27219 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 16212-17681 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPK01000015.1 Clostridioides difficile FD072 DNA, sequence015, whole genome shotgun sequence

⇒Summary: seq-len = 69085 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7345-8493 bp Zoom in on locus 1 x18 CRISPR array Location: 7345-8493 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 7345-8493 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7345-8493 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIPK01000035.1 Clostridioides difficile FD072 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 42394 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17049-17210 bp Zoom in on locus 1 x3 CRISPR array Location: 17049-17210 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 17049-17210 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17049-17210 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIPK01000007.1 Clostridioides difficile FD072 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 129018 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 68951-77272 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 68951-70060 bp Gene: unk Type: unknown Location: 70494-70670 bp Gene: pfam01881:cas6 Type: other Location: 70771-71508 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 71513-72988 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 73008-74024 bp Gene: cd09693:cas5 Type: Type-I Location: 74040-74837 bp Gene: cd09641:cas3HD Type: Type-I Location: 74864-77272 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIPK01000122.1 Clostridioides difficile FD072 DNA, sequence122, whole genome shotgun sequence

⇒Summary: seq-len = 1593 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1512-1607 bp Zoom in on locus 1 x2 CRISPR array Location: 1512-1607 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1512-1607 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1512-1607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIPK01000006.1 Clostridioides difficile FD072 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 130206 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44815-45308 bp Zoom in on locus 1 x8 CRISPR array Location: 44815-45308 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 44815-45308 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44815-45308 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)