CRISPRone

CRISPRone report for GCA_004315105.1_ASM431510v1

♦ Seq 1: BIPO01000001.1 Clostridioides difficile FD076 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 887469 bp; # of CRISPR array = 4; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9487-10375 bp 2 Locus 2: 393234-394785 bp 3 Locus 3: 560148-568466 bp 4 Locus 4: 641746-642435 bp Zoom in on locus 1 x3 x7 Zoom in on locus 2 x24 Zoom in on locus 3 Zoom in on locus 4 x11 CRISPR array Location: 9487-9647 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9487-9647 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 9957-10375 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 9957-10375 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 393234-394785 bp Num of repeats: 24 Spacers: s9-s31 CRISPR array Location: 393234-394785 bp Num of repeats: 24 Spacers: s9-s31 Gene: cd09641:cas3HD Type: Type-I Location: 560148-562556 bp Gene: cd09693:cas5 Type: Type-I Location: 562583-563380 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 563396-564409 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 564429-565904 bp Gene: pfam01881:cas6 Type: other Location: 565909-566646 bp Gene: unk Type: unknown Location: 566747-566923 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 567357-568466 bp CRISPR array Location: 641746-642435 bp Num of repeats: 11 Spacers: s32-s41 CRISPR array Location: 641746-642435 bp Num of repeats: 11 Spacers: s32-s41 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 9487-9647 bp]: array | spacers
           [Locus range 9957-10375 bp]: array | spacers
           [Locus range 393234-394785 bp]: array | spacers
           [Locus range 641746-642435 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPO01000004.1 Clostridioides difficile FD076 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 194398 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 117800-118752 bp Zoom in on locus 1 x15 CRISPR array Location: 117800-118752 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 117800-118752 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 117800-118752 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPO01000002.1 Clostridioides difficile FD076 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 447613 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 248025-260049 bp Zoom in on locus 1 x38 CRISPR array Location: 248025-250484 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 248025-250484 bp Num of repeats: 38 Spacers: s1-s37 Gene: cd09725:cas2 Type: universal Location: 250668-250934 bp Gene: cd09722:cas1 Type: universal Location: 250937-251917 bp Gene: pfam01930:cas4 Type: Type-I Location: 251920-252438 bp Gene: cd09641:cas3HD Type: Type-I Location: 252486-254807 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 254818-255519 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 255521-256435 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256437-258314 bp Gene: pfam01881:cas6 Type: other Location: 258320-259114 bp Gene: pfam13280:WYL Type: other Location: 259135-260049 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 248025-250484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPO01000026.1 Clostridioides difficile FD076 DNA, sequence26, whole genome shotgun sequence

⇒Summary: seq-len = 41182 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 518-3061 bp Zoom in on locus 1 x39 CRISPR array Location: 518-3061 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 518-3061 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 518-3061 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPO01000022.1 Clostridioides difficile FD076 DNA, sequence22, whole genome shotgun sequence

⇒Summary: seq-len = 49642 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5084-6239 bp Zoom in on locus 1 x18 CRISPR array Location: 5084-6239 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 5084-6239 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5084-6239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPO01000024.1 Clostridioides difficile FD076 DNA, sequence24, whole genome shotgun sequence

⇒Summary: seq-len = 47511 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34141-34366 bp Zoom in on locus 1 x4 CRISPR array Location: 34141-34366 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 34141-34366 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34141-34366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPO01000016.1 Clostridioides difficile FD076 DNA, sequence16, whole genome shotgun sequence

⇒Summary: seq-len = 63325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17903-18264 bp Zoom in on locus 1 x6 CRISPR array Location: 17903-18264 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 17903-18264 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17903-18264 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIPO01000030.1 Clostridioides difficile FD076 DNA, sequence30, whole genome shotgun sequence

⇒Summary: seq-len = 33081 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8635-15652 bp Zoom in on locus 1 x13 CRISPR array Location: 8635-9450 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 8635-9450 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG1203:cas3 Type: Type-I Location: 10016-11998 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 12009-13079 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 13100-14248 bp Gene: pfam01881:cas6 Type: other Location: 14250-15014 bp Gene: cd09693:cas5 Type: Type-I Location: 15005-15652 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 8635-9450 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)