CRISPRone

CRISPRone report for GCA_004315125.1_ASM431512v1

♦ Seq 1: BIPP01000026.1 Clostridioides difficile FD077 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 36885 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31369-31792 bp Zoom in on locus 1 x7 CRISPR array Location: 31369-31792 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 31369-31792 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31369-31792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPP01000099.1 Clostridioides difficile FD077 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 14365 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 12233-12716 bp Zoom in on locus 1 x8 CRISPR array Location: 12233-12716 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 12233-12716 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 12233-12716 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPP01000096.1 Clostridioides difficile FD077 DNA, sequence096, whole genome shotgun sequence

⇒Summary: seq-len = 14848 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10366-10926 bp Zoom in on locus 1 x9 CRISPR array Location: 10366-10926 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 10366-10926 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 10366-10926 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPP01000126.1 Clostridioides difficile FD077 DNA, sequence126, whole genome shotgun sequence

⇒Summary: seq-len = 10375 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 629-4890 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 629-1642 bp Gene: cd09693:cas5 Type: Type-I Location: 1658-2455 bp Gene: cd09641:cas3HD Type: Type-I Location: 2482-4890 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPP01000051.1 Clostridioides difficile FD077 DNA, sequence051, whole genome shotgun sequence

⇒Summary: seq-len = 25916 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2659-3019 bp Zoom in on locus 1 x6 CRISPR array Location: 2659-3019 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 2659-3019 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2659-3019 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPP01000020.1 Clostridioides difficile FD077 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 40430 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4272-15486 bp Zoom in on locus 1 x26 CRISPR array Location: 4272-5948 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 4272-5948 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 6132-6398 bp Gene: cd09722:cas1 Type: universal Location: 6401-7381 bp Gene: pfam01930:cas4 Type: Type-I Location: 7384-7902 bp Gene: cd09641:cas3HD Type: Type-I Location: 7950-10271 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 10282-10983 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 10985-11899 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 11901-13187 bp Gene: unk Type: unknown Location: 13245-13751 bp Gene: pfam01881:cas6 Type: other Location: 13757-14551 bp Gene: pfam13280:WYL Type: other Location: 14572-15486 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 4272-5948 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPP01000252.1 Clostridioides difficile FD077 DNA, sequence252, whole genome shotgun sequence

⇒Summary: seq-len = 1784 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 64-290 bp Zoom in on locus 1 x4 CRISPR array Location: 64-290 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 64-290 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 64-290 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIPP01000133.1 Clostridioides difficile FD077 DNA, sequence133, whole genome shotgun sequence

⇒Summary: seq-len = 9681 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-86 bp Zoom in on locus 1 x2 CRISPR array Location: 0-86 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 0-86 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-86 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIPP01000212.1 Clostridioides difficile FD077 DNA, sequence212, whole genome shotgun sequence

⇒Summary: seq-len = 3255 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1912-3197 bp Zoom in on locus 1 x20 CRISPR array Location: 1912-3197 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 1912-3197 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1912-3197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIPP01000082.1 Clostridioides difficile FD077 DNA, sequence082, whole genome shotgun sequence

⇒Summary: seq-len = 17572 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17100-17327 bp Zoom in on locus 1 x4 CRISPR array Location: 17100-17327 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17100-17327 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17100-17327 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIPP01000023.1 Clostridioides difficile FD077 DNA, sequence023, whole genome shotgun sequence

⇒Summary: seq-len = 38325 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5147-5436 bp Zoom in on locus 1 x5 CRISPR array Location: 5147-5436 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 5147-5436 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5147-5436 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: BIPP01000254.1 Clostridioides difficile FD077 DNA, sequence254, whole genome shotgun sequence

⇒Summary: seq-len = 1609 bp; # of CRISPR array = 0; # of cas gene = 2  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44-1607 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 44-781 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 786-1607 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: BIPP01000074.1 Clostridioides difficile FD077 DNA, sequence074, whole genome shotgun sequence

⇒Summary: seq-len = 18916 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17575-17669 bp Zoom in on locus 1 x2 CRISPR array Location: 17575-17669 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 17575-17669 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17575-17669 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 14: BIPP01000062.1 Clostridioides difficile FD077 DNA, sequence062, whole genome shotgun sequence

⇒Summary: seq-len = 21132 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20915-21142 bp Zoom in on locus 1 x4 CRISPR array Location: 20915-21142 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 20915-21142 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20915-21142 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)