CRISPRone

CRISPRone report for GCA_004315205.1_ASM431520v1

♦ Seq 1: BIPT01000069.1 Clostridioides difficile FD082 DNA, sequence069, whole genome shotgun sequence

⇒Summary: seq-len = 14488 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4598-5747 bp Zoom in on locus 1 x18 CRISPR array Location: 4598-5747 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 4598-5747 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4598-5747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPT01000047.1 Clostridioides difficile FD082 DNA, sequence047, whole genome shotgun sequence

⇒Summary: seq-len = 26286 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6195-6753 bp Zoom in on locus 1 x9 CRISPR array Location: 6195-6753 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 6195-6753 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6195-6753 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPT01000041.1 Clostridioides difficile FD082 DNA, sequence041, whole genome shotgun sequence

⇒Summary: seq-len = 36063 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3256-4013 bp Zoom in on locus 1 x12 CRISPR array Location: 3256-4013 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3256-4013 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3256-4013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPT01000060.1 Clostridioides difficile FD082 DNA, sequence060, whole genome shotgun sequence

⇒Summary: seq-len = 20318 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2807-2967 bp Zoom in on locus 1 x3 CRISPR array Location: 2807-2967 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2807-2967 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2807-2967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPT01000043.1 Clostridioides difficile FD082 DNA, sequence043, whole genome shotgun sequence

⇒Summary: seq-len = 31729 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3431-3658 bp Zoom in on locus 1 x4 CRISPR array Location: 3431-3658 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3431-3658 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3431-3658 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPT01000006.1 Clostridioides difficile FD082 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 131908 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 74065-78995 bp Zoom in on locus 1 x14 x4 x7 CRISPR array Location: 74065-74950 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 74065-74950 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 76744-76967 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 76744-76967 bp Num of repeats: 4 Spacers: s14-s16 CRISPR array Location: 78572-78995 bp Num of repeats: 7 Spacers: s17-s22 CRISPR array Location: 78572-78995 bp Num of repeats: 7 Spacers: s17-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 74065-74950 bp]: array | spacers
           [Locus range 76744-76967 bp]: array | spacers
           [Locus range 78572-78995 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPT01000034.1 Clostridioides difficile FD082 DNA, sequence034, whole genome shotgun sequence

⇒Summary: seq-len = 41205 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 9465-9558 bp Zoom in on locus 1 x2 CRISPR array Location: 9465-9558 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 9465-9558 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 9465-9558 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIPT01000102.1 Clostridioides difficile FD082 DNA, sequence102, whole genome shotgun sequence

⇒Summary: seq-len = 3316 bp; # of CRISPR array = 0; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-3314 bp Zoom in on locus 1 Gene: cd09687:cas7 Type: Subtype-I-B Location: 1-519 bp Gene: cd09693:cas5 Type: Type-I Location: 535-1092 bp Gene: cd09641:cas3HD Type: Type-I Location: 1247-2734 bp Gene: COG1203:cas3 Type: Type-I Location: 2718-3314 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIPT01000020.1 Clostridioides difficile FD082 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 69876 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4077-4434 bp Zoom in on locus 1 x6 CRISPR array Location: 4077-4434 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4077-4434 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4077-4434 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIPT01000003.1 Clostridioides difficile FD082 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 150607 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54940-65921 bp Zoom in on locus 1 x23 Gene: pfam13280:WYL Type: other Location: 54940-55827 bp Gene: pfam01881:cas6 Type: other Location: 55905-56642 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56648-58498 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58500-59414 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59416-60117 bp Gene: COG1203:cas3 Type: Type-I Location: 60128-62449 bp Gene: pfam01930:cas4 Type: Type-I Location: 62464-63015 bp Gene: cd09722:cas1 Type: universal Location: 63018-63998 bp Gene: cd09725:cas2 Type: universal Location: 64001-64267 bp CRISPR array Location: 64451-65921 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 64451-65921 bp Num of repeats: 23 Spacers: s1-s22 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64451-65921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIPT01000014.1 Clostridioides difficile FD082 DNA, sequence014, whole genome shotgun sequence

⇒Summary: seq-len = 84116 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2893-3510 bp Zoom in on locus 1 x10 CRISPR array Location: 2893-3510 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2893-3510 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2893-3510 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)