CRISPRone

CRISPRone report for GCA_004315245.1_ASM431524v1

♦ Seq 1: BIPV01000002.1 Clostridioides difficile FD084 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 402370 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 202206-202764 bp 2 Locus 2: 276011-283876 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 202206-202764 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 202206-202764 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 276011-277120 bp Gene: pfam01881:cas6 Type: other Location: 277378-278115 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 278120-279595 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 279615-280628 bp Gene: cd09693:cas5 Type: Type-I Location: 280644-281441 bp Gene: cd09641:cas3HD Type: Type-I Location: 281468-283876 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 202206-202764 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPV01000019.1 Clostridioides difficile FD084 DNA, sequence19, whole genome shotgun sequence

⇒Summary: seq-len = 56444 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17938-18298 bp Zoom in on locus 1 x6 CRISPR array Location: 17938-18298 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 17938-18298 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17938-18298 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPV01000007.1 Clostridioides difficile FD084 DNA, sequence07, whole genome shotgun sequence

⇒Summary: seq-len = 217942 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 98685-102298 bp 2 Locus 2: 192047-192273 bp Zoom in on locus 1 x13 x8 Zoom in on locus 2 x4 CRISPR array Location: 98685-99507 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 98685-99507 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 101811-102298 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 101811-102298 bp Num of repeats: 8 Spacers: s13-s19 CRISPR array Location: 192047-192273 bp Num of repeats: 4 Spacers: s20-s22 CRISPR array Location: 192047-192273 bp Num of repeats: 4 Spacers: s20-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 98685-99507 bp]: array | spacers
           [Locus range 101811-102298 bp]: array | spacers
           [Locus range 192047-192273 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPV01000005.1 Clostridioides difficile FD084 DNA, sequence05, whole genome shotgun sequence

⇒Summary: seq-len = 246902 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2800-2961 bp 2 Locus 2: 158415-170472 bp Zoom in on locus 1 x3 Zoom in on locus 2 x46 CRISPR array Location: 2800-2961 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 2800-2961 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09725:cas2 Type: universal Location: 158415-158705 bp Gene: cd09722:cas1 Type: universal Location: 158916-159923 bp Gene: pfam01930:cas4 Type: Type-I Location: 159949-160443 bp CRISPR array Location: 160528-163530 bp Num of repeats: 46 Spacers: s3-s47 CRISPR array Location: 160528-163530 bp Num of repeats: 46 Spacers: s3-s47 Gene: cd09641:cas3HD Type: Type-I Location: 163720-166278 bp Gene: cd09693:cas5 Type: Type-I Location: 166302-167042 bp Gene: pfam05107:cas7b Type: Type-I Location: 167044-168033 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 168026-169765 bp Gene: cd09652:cas6 Type: other Location: 169777-170472 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2800-2961 bp]: array | spacers
           [Locus range 160528-163530 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPV01000012.1 Clostridioides difficile FD084 DNA, sequence12, whole genome shotgun sequence

⇒Summary: seq-len = 139591 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25775-26264 bp Zoom in on locus 1 x8 CRISPR array Location: 25775-26264 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 25775-26264 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 25775-26264 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPV01000001.1 Clostridioides difficile FD084 DNA, sequence01, whole genome shotgun sequence

⇒Summary: seq-len = 480516 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 187051-187278 bp 2 Locus 2: 395408-395829 bp Zoom in on locus 1 x4 Zoom in on locus 2 x7 CRISPR array Location: 187051-187278 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 187051-187278 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 395408-395829 bp Num of repeats: 7 Spacers: s4-s9 CRISPR array Location: 395408-395829 bp Num of repeats: 7 Spacers: s4-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 187051-187278 bp]: array | spacers
           [Locus range 395408-395829 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)