CRISPRone

CRISPRone report for GCA_004315265.1_ASM431526v1

♦ Seq 1: BIPW01000005.1 Clostridioides difficile FD085 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 112945 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51754-61477 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 51754-54162 bp Gene: cd09693:cas5 Type: Type-I Location: 54189-54986 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 55002-56015 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 56035-57501 bp Gene: pfam01881:cas6 Type: other Location: 57506-58243 bp Gene: unk Type: unknown Location: 58557-59015 bp Gene: cas14:cas14 Type: Type-V Location: 59043-60215 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 60368-61477 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPW01000084.1 Clostridioides difficile FD085 DNA, sequence084, whole genome shotgun sequence

⇒Summary: seq-len = 10768 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5454-5942 bp Zoom in on locus 1 x8 CRISPR array Location: 5454-5942 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 5454-5942 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5454-5942 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPW01000003.1 Clostridioides difficile FD085 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 128266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17841-18396 bp Zoom in on locus 1 x9 CRISPR array Location: 17841-18396 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 17841-18396 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17841-18396 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPW01000026.1 Clostridioides difficile FD085 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 51907 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 51736-51896 bp Zoom in on locus 1 x3 CRISPR array Location: 51736-51896 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 51736-51896 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 51736-51896 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPW01000007.1 Clostridioides difficile FD085 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 106538 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28117-28477 bp Zoom in on locus 1 x6 CRISPR array Location: 28117-28477 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 28117-28477 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28117-28477 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)