CRISPRone

CRISPRone report for GCA_004315285.1_ASM431528v1

♦ Seq 1: BIPX01000007.1 Clostridioides difficile FD087 DNA, sequence007, whole genome shotgun sequence

⇒Summary: seq-len = 87216 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4055-4614 bp Zoom in on locus 1 x9 CRISPR array Location: 4055-4614 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4055-4614 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4055-4614 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIPX01000046.1 Clostridioides difficile FD087 DNA, sequence046, whole genome shotgun sequence

⇒Summary: seq-len = 35218 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29260-29488 bp Zoom in on locus 1 x4 CRISPR array Location: 29260-29488 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 29260-29488 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29260-29488 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIPX01000026.1 Clostridioides difficile FD087 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 59395 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35295-35585 bp Zoom in on locus 1 x5 CRISPR array Location: 35295-35585 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 35295-35585 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35295-35585 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIPX01000099.1 Clostridioides difficile FD087 DNA, sequence099, whole genome shotgun sequence

⇒Summary: seq-len = 9256 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1989-7792 bp Zoom in on locus 1 x6 x5 x2 CRISPR array Location: 1989-2350 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1989-2350 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 4993-5286 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 4993-5286 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 7697-7792 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 7697-7792 bp Num of repeats: 2 Spacers: s10-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1989-2350 bp]: array | spacers
           [Locus range 4993-5286 bp]: array | spacers
           [Locus range 7697-7792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIPX01000001.1 Clostridioides difficile FD087 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 177613 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20290-20582 bp Zoom in on locus 1 x5 CRISPR array Location: 20290-20582 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 20290-20582 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20290-20582 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIPX01000027.1 Clostridioides difficile FD087 DNA, sequence027, whole genome shotgun sequence

⇒Summary: seq-len = 57270 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18053-18607 bp Zoom in on locus 1 x9 CRISPR array Location: 18053-18607 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18053-18607 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18053-18607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIPX01000011.1 Clostridioides difficile FD087 DNA, sequence011, whole genome shotgun sequence

⇒Summary: seq-len = 79961 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20078-20501 bp Zoom in on locus 1 x7 CRISPR array Location: 20078-20501 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 20078-20501 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 20078-20501 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIPX01000004.1 Clostridioides difficile FD087 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 96616 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 55204-66419 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 55204-56118 bp Gene: pfam01881:cas6 Type: other Location: 56196-56933 bp Gene: unk Type: unknown Location: 56939-57445 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 57503-58789 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 58791-59705 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 59707-60408 bp Gene: cd09641:cas3HD Type: Type-I Location: 60419-62740 bp Gene: pfam01930:cas4 Type: Type-I Location: 62755-63306 bp Gene: cd09722:cas1 Type: universal Location: 63309-64289 bp Gene: cd09725:cas2 Type: universal Location: 64292-64558 bp CRISPR array Location: 64742-66419 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 64742-66419 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 64742-66419 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIPX01000002.1 Clostridioides difficile FD087 DNA, sequence002, whole genome shotgun sequence

⇒Summary: seq-len = 132761 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 71348-81080 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 71348-72457 bp Gene: cas14:cas14 Type: Type-V Location: 72610-73782 bp Gene: unk Type: unknown Location: 73810-74268 bp Gene: pfam01881:cas6 Type: other Location: 74582-75319 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 75324-76799 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 76819-77832 bp Gene: cd09693:cas5 Type: Type-I Location: 77848-78645 bp Gene: cd09641:cas3HD Type: Type-I Location: 78672-81080 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIPX01000020.1 Clostridioides difficile FD087 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 67884 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42469-42952 bp Zoom in on locus 1 x8 CRISPR array Location: 42469-42952 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 42469-42952 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42469-42952 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIPX01000013.1 Clostridioides difficile FD087 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 77991 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48501-49918 bp Zoom in on locus 1 x22 CRISPR array Location: 48501-49918 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 48501-49918 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 48501-49918 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)