CRISPRone

CRISPRone report for GCA_004315405.1_ASM431540v1

♦ Seq 1: BIQD01000151.1 Clostridioides difficile FD093 DNA, sequence151, whole genome shotgun sequence

⇒Summary: seq-len = 2675 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 334-562 bp Zoom in on locus 1 x4 CRISPR array Location: 334-562 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 334-562 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 334-562 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQD01000086.1 Clostridioides difficile FD093 DNA, sequence086, whole genome shotgun sequence

⇒Summary: seq-len = 14145 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56-151 bp Zoom in on locus 1 x2 CRISPR array Location: 56-151 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 56-151 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 56-151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQD01000035.1 Clostridioides difficile FD093 DNA, sequence035, whole genome shotgun sequence

⇒Summary: seq-len = 40778 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 16872-16967 bp Zoom in on locus 1 x2 CRISPR array Location: 16872-16967 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 16872-16967 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 16872-16967 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQD01000036.1 Clostridioides difficile FD093 DNA, sequence036, whole genome shotgun sequence

⇒Summary: seq-len = 39657 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 535-1089 bp Zoom in on locus 1 x9 CRISPR array Location: 535-1089 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 535-1089 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 535-1089 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQD01000010.1 Clostridioides difficile FD093 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 75129 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1972-5268 bp 2 Locus 2: 29179-29471 bp Zoom in on locus 1 x5 x6 Zoom in on locus 2 x5 CRISPR array Location: 1972-2264 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 1972-2264 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 4908-5268 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 4908-5268 bp Num of repeats: 6 Spacers: s5-s9 CRISPR array Location: 29179-29471 bp Num of repeats: 5 Spacers: s10-s13 CRISPR array Location: 29179-29471 bp Num of repeats: 5 Spacers: s10-s13 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1972-2264 bp]: array | spacers
           [Locus range 4908-5268 bp]: array | spacers
           [Locus range 29179-29471 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQD01000008.1 Clostridioides difficile FD093 DNA, sequence008, whole genome shotgun sequence

⇒Summary: seq-len = 80413 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3857-4416 bp Zoom in on locus 1 x9 CRISPR array Location: 3857-4416 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3857-4416 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3857-4416 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQD01000004.1 Clostridioides difficile FD093 DNA, sequence004, whole genome shotgun sequence

⇒Summary: seq-len = 109490 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28593-38325 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28593-31001 bp Gene: cd09693:cas5 Type: Type-I Location: 31028-31825 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31841-32854 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32874-34349 bp Gene: pfam01881:cas6 Type: other Location: 34354-35091 bp Gene: unk Type: unknown Location: 35405-35863 bp Gene: cas14:cas14 Type: Type-V Location: 35891-37063 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 37216-38325 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQD01000037.1 Clostridioides difficile FD093 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 39034 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3022-3506 bp Zoom in on locus 1 x8 CRISPR array Location: 3022-3506 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 3022-3506 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3022-3506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQD01000038.1 Clostridioides difficile FD093 DNA, sequence038, whole genome shotgun sequence

⇒Summary: seq-len = 38045 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 26737-37951 bp Zoom in on locus 1 x26 CRISPR array Location: 26737-28413 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 26737-28413 bp Num of repeats: 26 Spacers: s1-s25 Gene: cd09725:cas2 Type: universal Location: 28597-28863 bp Gene: cd09722:cas1 Type: universal Location: 28866-29846 bp Gene: pfam01930:cas4 Type: Type-I Location: 29849-30367 bp Gene: cd09641:cas3HD Type: Type-I Location: 30415-32736 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 32747-33448 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 33450-34364 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 34366-35652 bp Gene: unk Type: unknown Location: 35710-36216 bp Gene: pfam01881:cas6 Type: other Location: 36222-37016 bp Gene: pfam13280:WYL Type: other Location: 37037-37951 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 26737-28413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIQD01000076.1 Clostridioides difficile FD093 DNA, sequence076, whole genome shotgun sequence

⇒Summary: seq-len = 19305 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18165-19317 bp Zoom in on locus 1 x18 CRISPR array Location: 18165-19317 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 18165-19317 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18165-19317 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIQD01000020.1 Clostridioides difficile FD093 DNA, sequence020, whole genome shotgun sequence

⇒Summary: seq-len = 53898 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33338-33760 bp Zoom in on locus 1 x7 CRISPR array Location: 33338-33760 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 33338-33760 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33338-33760 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)