CRISPRone

CRISPRone report for GCA_004315445.1_ASM431544v1

♦ Seq 1: BIQF01000005.1 Clostridioides difficile FD095 DNA, sequence005, whole genome shotgun sequence

⇒Summary: seq-len = 135237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91603-92554 bp Zoom in on locus 1 x15 CRISPR array Location: 91603-92554 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 91603-92554 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91603-92554 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQF01000106.1 Clostridioides difficile FD095 DNA, sequence106, whole genome shotgun sequence

⇒Summary: seq-len = 4905 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 99-194 bp Zoom in on locus 1 x2 CRISPR array Location: 99-194 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 99-194 bp Num of repeats: 2 Spacers: s1-s1 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 99-194 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQF01000044.1 Clostridioides difficile FD095 DNA, sequence044, whole genome shotgun sequence

⇒Summary: seq-len = 35192 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21822-22047 bp Zoom in on locus 1 x4 CRISPR array Location: 21822-22047 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 21822-22047 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 21822-22047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQF01000010.1 Clostridioides difficile FD095 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 83187 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-10014 bp Zoom in on locus 1 x38 Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 3-1601 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 1603-2517 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 2519-3220 bp Gene: cd09641:cas3HD Type: Type-I Location: 3231-5552 bp Gene: pfam01930:cas4 Type: Type-I Location: 5567-6118 bp Gene: cd09722:cas1 Type: universal Location: 6121-7101 bp Gene: cd09725:cas2 Type: universal Location: 7104-7370 bp CRISPR array Location: 7554-10014 bp Num of repeats: 38 Spacers: s1-s37 CRISPR array Location: 7554-10014 bp Num of repeats: 38 Spacers: s1-s37 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 7554-10014 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQF01000033.1 Clostridioides difficile FD095 DNA, sequence033, whole genome shotgun sequence

⇒Summary: seq-len = 45608 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 39371-40525 bp Zoom in on locus 1 x18 CRISPR array Location: 39371-40525 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 39371-40525 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 39371-40525 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQF01000013.1 Clostridioides difficile FD095 DNA, sequence013, whole genome shotgun sequence

⇒Summary: seq-len = 79221 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19171-20059 bp Zoom in on locus 1 x3 x7 CRISPR array Location: 19171-19331 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19171-19331 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 19641-20059 bp Num of repeats: 7 Spacers: s3-s8 CRISPR array Location: 19641-20059 bp Num of repeats: 7 Spacers: s3-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 19171-19331 bp]: array | spacers
           [Locus range 19641-20059 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQF01000001.1 Clostridioides difficile FD095 DNA, sequence001, whole genome shotgun sequence

⇒Summary: seq-len = 184930 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 73068-81386 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 73068-74177 bp Gene: unk Type: unknown Location: 74611-74787 bp Gene: pfam01881:cas6 Type: other Location: 74888-75625 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 75630-77105 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 77125-78138 bp Gene: cd09693:cas5 Type: Type-I Location: 78154-78951 bp Gene: cd09641:cas3HD Type: Type-I Location: 78978-81386 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQF01000027.1 Clostridioides difficile FD095 DNA, sequence027, whole genome shotgun sequence

⇒Summary: seq-len = 50094 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 43676-45228 bp Zoom in on locus 1 x24 CRISPR array Location: 43676-45228 bp Num of repeats: 24 Spacers: s1-s23 CRISPR array Location: 43676-45228 bp Num of repeats: 24 Spacers: s1-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 43676-45228 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQF01000043.1 Clostridioides difficile FD095 DNA, sequence043, whole genome shotgun sequence

⇒Summary: seq-len = 35763 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 11562-18579 bp Zoom in on locus 1 x13 CRISPR array Location: 11562-12377 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 11562-12377 bp Num of repeats: 13 Spacers: s1-s12 Gene: COG1203:cas3 Type: Type-I Location: 12943-14925 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 14936-16006 bp Gene: cls000029:cas8b2 Type: Subtype-I-B Location: 16027-17175 bp Gene: pfam01881:cas6 Type: other Location: 17177-17941 bp Gene: cd09693:cas5 Type: Type-I Location: 17932-18579 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 11562-12377 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIQF01000047.1 Clostridioides difficile FD095 DNA, sequence047, whole genome shotgun sequence

⇒Summary: seq-len = 31344 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6617-6978 bp Zoom in on locus 1 x6 CRISPR array Location: 6617-6978 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6617-6978 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6617-6978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIQF01000037.1 Clostridioides difficile FD095 DNA, sequence037, whole genome shotgun sequence

⇒Summary: seq-len = 40651 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38122-40666 bp Zoom in on locus 1 x39 CRISPR array Location: 38122-40666 bp Num of repeats: 39 Spacers: s1-s38 CRISPR array Location: 38122-40666 bp Num of repeats: 39 Spacers: s1-s38 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38122-40666 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)