CRISPRone

CRISPRone report for GCA_004315465.1_ASM431546v1

♦ Seq 1: BIQG01000050.1 Clostridioides difficile FD096 DNA, sequence050, whole genome shotgun sequence

⇒Summary: seq-len = 25860 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18175-19511 bp Zoom in on locus 1 x9 x10 CRISPR array Location: 18175-18732 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18175-18732 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 18887-19511 bp Num of repeats: 10 Spacers: s9-s17 CRISPR array Location: 18887-19511 bp Num of repeats: 10 Spacers: s9-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 18175-18732 bp]: array | spacers
           [Locus range 18887-19511 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQG01000068.1 Clostridioides difficile FD096 DNA, sequence068, whole genome shotgun sequence

⇒Summary: seq-len = 18844 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15455-15938 bp Zoom in on locus 1 x8 CRISPR array Location: 15455-15938 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 15455-15938 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15455-15938 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQG01000016.1 Clostridioides difficile FD096 DNA, sequence016, whole genome shotgun sequence

⇒Summary: seq-len = 81586 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60902-61195 bp Zoom in on locus 1 x5 CRISPR array Location: 60902-61195 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 60902-61195 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60902-61195 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQG01000044.1 Clostridioides difficile FD096 DNA, sequence044, whole genome shotgun sequence

⇒Summary: seq-len = 28284 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4010-4569 bp Zoom in on locus 1 x9 CRISPR array Location: 4010-4569 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 4010-4569 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4010-4569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQG01000026.1 Clostridioides difficile FD096 DNA, sequence026, whole genome shotgun sequence

⇒Summary: seq-len = 54489 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35346-35636 bp Zoom in on locus 1 x5 CRISPR array Location: 35346-35636 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 35346-35636 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 35346-35636 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQG01000003.1 Clostridioides difficile FD096 DNA, sequence003, whole genome shotgun sequence

⇒Summary: seq-len = 134611 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 114766-114993 bp Zoom in on locus 1 x4 CRISPR array Location: 114766-114993 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 114766-114993 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 114766-114993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: BIQG01000100.1 Clostridioides difficile FD096 DNA, sequence100, whole genome shotgun sequence

⇒Summary: seq-len = 8940 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1238-7040 bp Zoom in on locus 1 x2 x5 x6 CRISPR array Location: 1238-1332 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1238-1332 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 3744-4036 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 3744-4036 bp Num of repeats: 5 Spacers: s2-s5 CRISPR array Location: 6680-7040 bp Num of repeats: 6 Spacers: s6-s10 CRISPR array Location: 6680-7040 bp Num of repeats: 6 Spacers: s6-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1238-1332 bp]: array | spacers
           [Locus range 3744-4036 bp]: array | spacers
           [Locus range 6680-7040 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: BIQG01000010.1 Clostridioides difficile FD096 DNA, sequence010, whole genome shotgun sequence

⇒Summary: seq-len = 98126 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2384-2806 bp Zoom in on locus 1 x7 CRISPR array Location: 2384-2806 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 2384-2806 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2384-2806 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: BIQG01000006.1 Clostridioides difficile FD096 DNA, sequence006, whole genome shotgun sequence

⇒Summary: seq-len = 109189 bp; # of CRISPR array = 0; # of cas gene = 7  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28334-38066 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 28334-30742 bp Gene: cd09693:cas5 Type: Type-I Location: 30769-31566 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 31582-32595 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 32615-34090 bp Gene: pfam01881:cas6 Type: other Location: 34095-34832 bp Gene: unk Type: unknown Location: 35146-35604 bp Gene: cas14:cas14 Type: Type-V Location: 35632-36804 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 36957-38066 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: BIQG01000083.1 Clostridioides difficile FD096 DNA, sequence083, whole genome shotgun sequence

⇒Summary: seq-len = 12630 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3152-3706 bp Zoom in on locus 1 x9 CRISPR array Location: 3152-3706 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3152-3706 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3152-3706 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: BIQG01000009.1 Clostridioides difficile FD096 DNA, sequence009, whole genome shotgun sequence

⇒Summary: seq-len = 98127 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 54335-65550 bp Zoom in on locus 1 x26 Gene: pfam13280:WYL Type: other Location: 54335-55249 bp Gene: pfam01881:cas6 Type: other Location: 55327-56064 bp Gene: unk Type: unknown Location: 56070-56576 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 56634-57920 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 57922-58836 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 58838-59539 bp Gene: cd09641:cas3HD Type: Type-I Location: 59550-61871 bp Gene: pfam01930:cas4 Type: Type-I Location: 61886-62437 bp Gene: cd09722:cas1 Type: universal Location: 62440-63420 bp Gene: cd09725:cas2 Type: universal Location: 63423-63689 bp CRISPR array Location: 63873-65550 bp Num of repeats: 26 Spacers: s1-s25 CRISPR array Location: 63873-65550 bp Num of repeats: 26 Spacers: s1-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 63873-65550 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)