CRISPRone

CRISPRone report for GCA_004315485.1_ASM431548v1

♦ Seq 1: BIQH01000006.1 Clostridioides difficile FD097 DNA, sequence06, whole genome shotgun sequence

⇒Summary: seq-len = 238805 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38276-38637 bp Zoom in on locus 1 x6 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 38276-38637 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 38276-38637 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: BIQH01000003.1 Clostridioides difficile FD097 DNA, sequence03, whole genome shotgun sequence

⇒Summary: seq-len = 329947 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107338-107499 bp 2 Locus 2: 262953-275010 bp Zoom in on locus 1 x3 Zoom in on locus 2 x46 CRISPR array Location: 107338-107499 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 107338-107499 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09725:cas2 Type: universal Location: 262953-263243 bp Gene: cd09722:cas1 Type: universal Location: 263454-264461 bp Gene: pfam01930:cas4 Type: Type-I Location: 264487-264981 bp CRISPR array Location: 265066-268068 bp Num of repeats: 46 Spacers: s3-s47 CRISPR array Location: 265066-268068 bp Num of repeats: 46 Spacers: s3-s47 Gene: cd09641:cas3HD Type: Type-I Location: 268258-270816 bp Gene: cd09693:cas5 Type: Type-I Location: 270840-271580 bp Gene: pfam05107:cas7b Type: Type-I Location: 271582-272571 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 272564-274303 bp Gene: cd09652:cas6 Type: other Location: 274315-275010 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 107338-107499 bp]: array | spacers
           [Locus range 265066-268068 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: BIQH01000035.1 Clostridioides difficile FD097 DNA, sequence35, whole genome shotgun sequence

⇒Summary: seq-len = 14060 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 8759-8985 bp Zoom in on locus 1 x4 CRISPR array Location: 8759-8985 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 8759-8985 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 8759-8985 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: BIQH01000004.1 Clostridioides difficile FD097 DNA, sequence04, whole genome shotgun sequence

⇒Summary: seq-len = 271981 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 180148-180569 bp Zoom in on locus 1 x7 CRISPR array Location: 180148-180569 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 180148-180569 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 180148-180569 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: BIQH01000002.1 Clostridioides difficile FD097 DNA, sequence02, whole genome shotgun sequence

⇒Summary: seq-len = 377985 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 244570-245128 bp 2 Locus 2: 318375-326240 bp Zoom in on locus 1 x9 Zoom in on locus 2 CRISPR array Location: 244570-245128 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 244570-245128 bp Num of repeats: 9 Spacers: s1-s8 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 318375-319484 bp Gene: pfam01881:cas6 Type: other Location: 319742-320479 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 320484-321959 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 321979-322992 bp Gene: cd09693:cas5 Type: Type-I Location: 323008-323805 bp Gene: cd09641:cas3HD Type: Type-I Location: 323832-326240 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 244570-245128 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: BIQH01000009.1 Clostridioides difficile FD097 DNA, sequence09, whole genome shotgun sequence

⇒Summary: seq-len = 146484 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 44226-47840 bp Zoom in on locus 1 x8 x13 CRISPR array Location: 44226-44714 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 44226-44714 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 47017-47840 bp Num of repeats: 13 Spacers: s8-s19 CRISPR array Location: 47017-47840 bp Num of repeats: 13 Spacers: s8-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 44226-44714 bp]: array | spacers
           [Locus range 47017-47840 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)